Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03458 and BL01887
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_03458___ribT.1.5803.seq
# -bsequence dna-align/BL01887___ribT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03458___ribT-BL01887___ribT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03458___ribT-BL01887___ribT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03458___ribT
# 2: BL01887___ribT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 390
# Identity: 286/390 (73.3%)
# Similarity: 286/390 (73.3%)
# Gaps: 30/390 ( 7.7%)
# Score: 1064.0
#
#
#=======================================
BSNT_03458___ 1 ATGTTAATTCGTTATAAAAAATCGTTTGAAAAGATTGCGATGGGGCTTCT 50
||||||||||||||||||||.||.||.||||||||||||||||||||.||
BL01887___rib 1 ATGTTAATTCGTTATAAAAAGTCATTCGAAAAGATTGCGATGGGGCTCCT 50
BSNT_03458___ 51 TTCGTTTATGCCGAATGAAAAAGACCTTAAGCAGCTTCAGCAGACAATTA 100
||||||||||||||||||.||.|||.|.||||||||||||||||||||||
BL01887___rib 51 TTCGTTTATGCCGAATGAGAAGGACGTCAAGCAGCTTCAGCAGACAATTA 100
BSNT_03458___ 101 AGGACTACGAAACGGATACAGACCGCCAGCTCTTTCTTTGGAAAGAGGAC 150
|.|||||.||||||||.||.||..|.||.||.||.||.||||||||.|.|
BL01887___rib 101 AAGACTATGAAACGGACACTGAAAGGCAACTGTTCCTATGGAAAGAAGGC 150
BSNT_03458___ 151 GAGGATATCGTCGGAGCAATCGGAGTCGAAAAA----AAGGATTCTGAGG 196
||||||||.|||||.....|.|||||.||.||| |||.| ||.|
BL01887___rib 151 GAGGATATTGTCGGCTGTGTAGGAGTAGAGAAAAGAGAAGAA----GAAG 196
BSNT_03458___ 197 TTGAGATCCGGCATATCAGTGTGAATCCTTCTCATCGCCATCAAGGAATC 246
|.||||||..||||||||||||.|||||.|||||.||.|||||.||||||
BL01887___rib 197 TCGAGATCAAGCATATCAGTGTAAATCCGTCTCACCGTCATCAGGGAATC 246
BSNT_03458___ 247 GGAAAACAGATGATGGATGCTTTAAAGCATTTATTCAAAA--CGCAAGTA 294
||.|||.|.|||.||...||| ||||...|||.| .|||..||
BL01887___rib 247 GGCAAAAAAATGGTGTCGGCT-------ATTTCGCCAATATTTGCACCTA 289
BSNT_03458___ 295 -----CTGGTTCCAAATGAATTAACGCAGAGCTTTTTCGAACGTTGTCAA 339
||||||||.|||||||||||..|..|.||.||.||.||.|||||.
BL01887___rib 290 AACCGCTGGTTCCGAATGAATTAACTAAAGGATTCTTTGAGCGCTGTCAG 339
BSNT_03458___ 340 GGTCAGCAGGATCAAGACATTTCATA----CAATAATTAA 375
|.|||..|..||.|||||||..|||| ||||.|
BL01887___rib 340 GATCATGAAAATGAAGACATCACATATAACCAATGA---- 375
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