Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03455 and BL01885
See
Amino acid alignment /
Visit
BSNT_03455 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:26
# Commandline: needle
# -asequence dna-align/BSNT_03455___ypuH.1.5803.seq
# -bsequence dna-align/BL01885___scpB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03455___ypuH-BL01885___scpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03455___ypuH-BL01885___scpB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03455___ypuH
# 2: BL01885___scpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 606
# Identity: 456/606 (75.2%)
# Similarity: 456/606 (75.2%)
# Gaps: 24/606 ( 4.0%)
# Score: 1669.0
#
#
#=======================================
BSNT_03455___ 1 ATGGGGCTTGATATCGTGAATTGGAAAGCTATTGTGGAAGCCCTTCTTTA 50
|||..||||||||||||||||||||||||.|||||.|||||.|||.|.||
BL01885___scp 1 ATGACGCTTGATATCGTGAATTGGAAAGCCATTGTCGAAGCGCTTTTGTA 50
BSNT_03455___ 51 TGCGGCAGGCGATGAAGGGCTTACAAAAAAGCAGCTGTTAACAGTGCTTG 100
|||.||.|||||.||.||.||.||||||||.|||||.|||.|.||..|.|
BL01885___scp 51 TGCCGCCGGCGACGAGGGCCTGACAAAAAAACAGCTATTATCCGTTTTGG 100
BSNT_03455___ 101 AAATCGAAG-AGCCTGAACTGAACACG--ATCATGGCGGATGTGGCGGAC 147
|..||||.| |||| ||.||| |..| ||.|||...||||| ..|.
BL01885___scp 101 AGGTCGATGAAGCC-GAGCTG--CTGGATATTATGCTTGATGT---CAAA 144
BSNT_03455___ 148 GAATACC-------GCGAAGATACACGAGGGATTGAACTTATTGAGTATG 190
||| ||| ..|||||.| |.||.||.||.|||.|.|||||||
BL01885___scp 145 GAA-ACCTATGAAAAAGAAGACA---GGGGCATCGAGCTTGTCGAGTATG 190
BSNT_03455___ 191 CAGATACGTACATGCTCTCTACCAAAAAAGACTTTGCGCC--TTACTTGA 238
|.||||||||||||||.||.|||||||||||.|| |||| .||.||||
BL01885___scp 191 CGGATACGTACATGCTTTCGACCAAAAAAGAATT--CGCCGTCTATTTGA 238
BSNT_03455___ 239 AAAAACTGATTGAAGTGCCGTCAAAGGGCCTTTCTCAAGCATCTTTAGAA 288
||||.|||||.||||..||.|||||.||.||||||||.||..|..|.||.
BL01885___scp 239 AAAAGCTGATCGAAGCCCCTTCAAAAGGGCTTTCTCAGGCTGCGCTCGAG 288
BSNT_03455___ 289 GTACTGGCCATTGTTTCATACAAACAGCCAATTACGAGAGCAGAAATTGA 338
||..|||||||.||.||.||.||.|||||.||.||||||||.|||.||||
BL01885___scp 289 GTTTTGGCCATCGTCTCTTATAAGCAGCCGATCACGAGAGCGGAAGTTGA 338
BSNT_03455___ 339 AGAAATCAGAGGAGTAAAATCAGAGCGGATTTTACACAGTCTTGTCGCGA 388
.||.||||||||.||.|||||.||.||||||.|.||.||.||.|||||.|
BL01885___scp 339 GGAGATCAGAGGGGTCAAATCTGAACGGATTCTTCAGAGCCTGGTCGCAA 388
BSNT_03455___ 389 AGGCGCTATTGTGTGAAGTAGGGCGTGCCGATGGTCCGGGGCGGGCCATT 438
|.|||||.||.||.|||||.||.||.||.|||||.|||||..||||.||.
BL01885___scp 389 AAGCGCTGTTATGCGAAGTCGGACGGGCGGATGGACCGGGCAGGGCGATC 438
BSNT_03455___ 439 TTATACGGTACTACGCCGACTTTTCTTGAACAATTCGGTCTGAAAACGCT 488
||.||||||||.||....||.|||||.|||||||||||..|.||||||||
BL01885___scp 439 TTGTACGGTACAACAGAAACATTTCTGGAACAATTCGGCTTAAAAACGCT 488
BSNT_03455___ 489 GGACGAGCTTCCGCCGCTGCCTGAAAATGCGGAAGAAGACGTTCTTCAAG 538
.||.|||||||||||||||||.|||||||..||||||||||...||||.|
BL01885___scp 489 TGAAGAGCTTCCGCCGCTGCCCGAAAATGTAGAAGAAGACGGGGTTCAGG 538
BSNT_03455___ 539 AAGAAGCAGATTTATTTTTTGAAAACTTTAACCAAACCTTCGAAGATATA 588
|||||||.|||.|.||.||.||||||||||||||.||.|||||||||.||
BL01885___scp 539 AAGAAGCCGATCTGTTCTTCGAAAACTTTAACCAGACGTTCGAAGATTTA 588
BSNT_03455___ 589 AAATAG 594
||||||
BL01885___scp 589 AAATAG 594
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.