Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03457 and BL01879
See
Amino acid alignment /
Visit
BSNT_03457 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_03457___ypuF.1.5803.seq
# -bsequence dna-align/BL01879.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03457___ypuF-BL01879.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03457___ypuF-BL01879.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03457___ypuF
# 2: BL01879
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 577
# Identity: 367/577 (63.6%)
# Similarity: 367/577 (63.6%)
# Gaps: 107/577 (18.5%)
# Score: 1075.5
#
#
#=======================================
BSNT_03457___ 1 TTGTATCCGAAAGCTTATATAGATTATCTCGTTGAGTTTCACGCGACACG 50
.|||||||..||||||||||.|||||.||||..||.||.||||.|.||.|
BL01879 1 ATGTATCCCCAAGCTTATATCGATTACCTCGCCGAATTCCACGGGGCAAG 50
BSNT_03457___ 51 GGATTATTTTGAATGCCATGAAATATTAGAAGAATATTGGAAGGAAGATC 100
||||||||||||.|||||.|||||..|||||||..|||||||..|.||.|
BL01879 51 GGATTATTTTGAGTGCCACGAAATTCTAGAAGACCATTGGAAAAAGGACC 100
BSNT_03457___ 101 C-----GCCAAAGAAACGAAA--ACGCTATTGGGTCGGCTTTATTCAGCT 143
| || ||...|||| || |.||||||||.||.||||||||
BL01879 101 CTCCCGGC----GAGCGGAAATTAC---ACTGGGTCGGGTTGATTCAGCT 143
BSNT_03457___ 144 TGCAGTTGCTTTATATCATCACAGAAGGC--AGAATACA-----GCCGGG 186
.||.||.||..|.|||||||| || |||| ||| |||||.
BL01879 144 GGCTGTCGCGCTCTATCATCA------GCGGAGAA-ACAATTTTGCCGGC 186
BSNT_03457___ 187 GCAAAAAGACTGATGGCAAACAGCATCCGAAT-------TCTCAAAGCAG 229
||..|.|||.|.|||||.||||||||.||.|| ||..|||
BL01879 187 GCGGAGAGATTAATGGCGAACAGCATTCGCATCCTGGCGTCCGAAA---- 232
BSNT_03457___ 230 AACACCGGGCAGTCGAAGACTTAG---GGCTT-GATCATGGCCGTTTGCT 275
||.|| |||||.||| |.| ||.|| |||.|..||||.||..|
BL01879 233 AAGAC---GCAGTTGAA----TCGCTCGGATTGGATTACAGCCGCTTCAT 275
BSNT_03457___ 276 CGAGC--TTATGCAATCGG-TTTACGAACAAATCGAAACGGGC----TCT 318
|||.| ||| |..||| .|.||.||.|||||||| || ||.
BL01879 276 CGAACTGTTA---AGGCGGACTCACCAAAAAATCGAA----GCCCATTCC 318
BSNT_03457___ 319 GCCTATAAAAGCATTATGCTGCCAATCAAAGATGAGAAACTGGAGGAAGC 368
.|.|||.|||||||.|||||.||.|||..|||| |||||
BL01879 319 CCTTATGAAAGCATCATGCTCCCGATCGCAGAT------------GAAGC 356
BSNT_03457___ 369 ATGCAGGATC---GAATGCAGGAAA---------AAAAAGT-ATACATGG 405
|| .|||| |.||||.||||| ||||||| |||...|.
BL01879 357 AT---TGATCAAAGCATGCCGGAAACAATGTGAGAAAAAGTCATATGAGT 403
BSNT_03457___ 406 GGGCAGTCCA----GTGCACTCAGGAACATATTTCTGATCGACAAACACC 451
|||.|| || .||||| ||| ||...|||.|.||.||.|||||||
BL01879 404 GGGGAG--CAAACGCTGCAC-CAG--ACGCCTTTATCATTGATAAACACC 448
BSNT_03457___ 452 GTTTGCGGGATCGGACTGACGTCAT--CCGTGAACGTGAAAAAGAAATAG 499
|..||.||||.||||||||.||.|| |||.|| |.||.|||.||||..
BL01879 449 GGCTGAGGGACCGGACTGAAGTAATTGCCGAGA--GGGATAAACAAATCA 496
BSNT_03457___ 500 AACGCAGAAAAAAAAGCAGAGGCTGA- 525
|.||..|||||||.|||||||||| |
BL01879 497 AGCGGCGAAAAAAGAGCAGAGGCT-AG 522
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.