Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00904 and BL01877
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_00904.1.5803.seq
# -bsequence dna-align/BL01877.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00904-BL01877.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00904-BL01877.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00904
# 2: BL01877
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 701
# Identity: 332/701 (47.4%)
# Similarity: 332/701 (47.4%)
# Gaps: 250/701 (35.7%)
# Score: 593.0
#
#
#=======================================
BSNT_00904 1 ATGTCCAAAGTGGATAGAAGAATAACC-------AAAAGCCAAGAGGCTA 43
||| |.||...||||.||..||| ||||..||.||
BL01877 1 ATG-----ACTGAGCAGAAAAAAGACCGCAGGGTAAAACGCACGA----- 40
BSNT_00904 44 TTAAAA------TAG-------CTCTGATTGAGCTGATGACTGAAA--AA 78
|||| ||| |||| .|||.||||||| ||| ||
BL01877 41 --AAAAAATGATTAGAGACGCACTCT--CTGAACTGATGA---AAAATAA 83
BSNT_00904 79 AG-TTTTGATCATAT-TACGATTAAGGAAATTTC--TGAAAGGGCAAATG 124
|| .|||||..|.|| |.|| |||.|||.|||.| .|||| ||..||.
BL01877 84 AGCGTTTGAAGAGATATCCG-TTACGGACATTACGAAGAAA--GCCGATA 130
BSNT_00904 125 TAAACCGGGGAACAATCTATCTT-CATTACTTAGATAAATTTGATCTATT 173
|.|||||.||.||..|.|| ||| ||.|||..||||||||..|||.|..|
BL01877 131 TTAACCGCGGCACGTTTTA-CTTGCACTACGAAGATAAATACGATTTGCT 179
BSNT_00904 174 AG---AAA---------AAATTATGGAAGAGCAT--ATAAA----CAATA 205
.| ||| ||||.||..||||| || ||||| |.|.|
BL01877 180 GGACCAAAGCGAGGAGGAAATCATCCAAGAG-ATCAATAAAATTGCTAAA 228
BSNT_00904 206 TGGGGGATTTTTGTGAGTCGGCAGCTGAAATGGACTGGATTGAATC--GA 253
.|...||| |.|.|| |||||| ||.|||.|||| ||
BL01877 229 CGCTCGAT-----TCACTC---------AATGGA-TGTATTAAATCAGGA 263
BSNT_00904 254 CTGTACACTGCATGGA--ATACCTTGAGA---------GTAATTATTTAT 292
||| .||.|| ||.|..|||.| |..|||.||.|.
BL01877 264 -TGT------GATTGACCATCCGCTGACATTCGTCGTCGACATTTTTCAA 306
BSNT_00904 293 TCTTT--------TCGACGATGTTAGCCAGTGAAGGCGCTCGATATTTTC 334
|.|.| .|||.|.|.||| ||||||| |..|||..
BL01877 307 TATATAAAAGAAAACGAAGTTTTTA-----TGAAGGC-----AGTTTTAG 346
BSNT_00904 335 GCAGTCA--------GTTCCTTAAGTTTAATATCGAA---------GAGT 367
||..|.| ||||.||..||||||.||..|| ||
BL01877 347 GCCCTAAAGGCCCGGGTTCTTTCCGTTTAAAATTCAAATCGGTTTTGA-- 394
BSNT_00904 368 TCAG---------------GAAA-----GATGTAGA-----------TGT 386
|||| |||| ||| .||| |||
BL01877 395 TCAGCAATTTAAAACGGCTGAAAACAGCGAT-CAGAACGGATCCGATTGT 443
BSNT_00904 387 AACGAAAGGCAA---GAATTACGGCCAAA---GTGAAGATGTCATTGTTG 430
|.||.|||.|.| ||.||.|..|..|| |.|...||.|||..|
BL01877 444 ACCGGAAGACTACTTGATTTCCTACATAACCGGCGCTCATATCAGCG--- 490
BSNT_00904 431 AATTTAT--AGCAAATGCTTACGTAGGGGTAG--------------TGGA 464
|||| |||||..||||..|.|.|||..| ||..
BL01877 491 ---TTATGCAGCAATGGCTTGAGAACGGGATGAAAGAGACGCCGCATGAT 537
BSNT_00904 465 ATGG---TGGTT--------AAAAAACGAAATG---CCT---TATCCGCC 497
|||| ||.|| ||.||.||.|||| ||| |||
BL01877 538 ATGGCGCTGATTTTATCAAAAATAACCGGAATGGGCCCTGCATAT----- 582
BSNT_00904 498 TCGTGTCATGGC--AGAAAAAGTGGGGGAGTTATTAGAGCGGATTTTATA 545
|.|.||.||| ||||||| |.|.|
BL01877 583 --GCGGCAGGGCTGAGAAAAA-------AATGA----------------- 606
BSNT_00904 546 A 546
BL01877 606 - 606
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