Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02953 and BL01876
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_02953.1.5803.seq
# -bsequence dna-align/BL01876.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02953-BL01876.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02953-BL01876.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02953
# 2: BL01876
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 548
# Identity: 292/548 (53.3%)
# Similarity: 292/548 (53.3%)
# Gaps: 181/548 (33.0%)
# Score: 721.5
#
#
#=======================================
BSNT_02953 1 ATGAAACAT-----ATCATTGCGCTTGCTTCAAAGATTGCTTTCACT--- 42
|||||.||| |.||||| ||.||.||| ||||.|
BL01876 1 ATGAAGCATGTAAGAGCATTG----TGTTTAAAA-------TTCATTGTG 39
BSNT_02953 43 ---CTCGCCCTTTTATATGTG-------------ATTTTGGACAGAGTCT 76
||.|.||||||||||||| .||||||
BL01876 40 AGCCTTGTCCTTTTATATGTGGTCCTAACTCTGTTTTTTGG--------- 80
BSNT_02953 77 ATCACGCATCCTTC--TTAAGTGTGATGTTT--------ATTGCACTTTT 116
|.||| ||..|||..|||||| |||| |||
BL01876 81 ---------CGTTCCATTCGGTGAAATGTTTGTTTTGACATTG----TTT 117
BSNT_02953 117 CTTAGGTTTTG-TTTCCTATCTTTCTGGT--GACATGCTCGTCT--TACC 161
|| ||.|.|| |.||||| |||||| ||.||..||..|| |.||
BL01876 118 CT--GGGTGTGATATCCTA----TCTGGTCGGAGATCTTCTGCTGCTGCC 161
BSNT_02953 162 CAGAACAAACAATATTACAGCTTCATTGGCTGACTTTGGCCTTTCATTCG 211
.|||||||||||||..||.||..||.|||..||.||||||||||||.|||
BL01876 162 GAGAACAAACAATACAACCGCGACAATGGGAGATTTTGGCCTTTCACTCG 211
BSNT_02953 212 TTATT-CTTTGGGT-ATT-------TGTTTTAACCCAAACAA-------- 244
|||| .||||||| ||| || |.|||.||
BL01876 212 -TATTGATTTGGGTGATTCTCGCCATG-------CAAAATAATCCCCCGT 253
BSNT_02953 245 --GAAACGATTTCTCACCATTTGGAGCAGCT---CTCCTTTCCG----CT 285
|..|||.||.|| |||||| .||.|.||.| |.
BL01876 254 ATGGTACGCTTGCT-----------GCAGCTTCAATCGTGTCAGCGATCG 292
BSNT_02953 286 GCCTGTCTTACTGTTTTTGAATTCTTTTTTCATCGGTATTTATTGAA--A 333
|| ||| ||.||.||.||||..|||||.||.||.|| |||.||| .
BL01876 293 GC--GTC--ACAGTGTTCGAATATTTTTTCCACCGCTA--TATGGAAGCC 336
BSNT_02953 334 AATGTACTTG-ATGAAAATTTCCGAAATGAACTGTCAGCG-------AGA 375
||.|| |||| |.|||| |.||| |||.|..|.|| |||
BL01876 337 AACGT-CTTGAACGAAA----CAGAA---AACGGAAAACGGGAAAACAGA 378
BSNT_02953 376 GATAA--------CACGTTGCAGTATCAAACGGAAGCCGCGGACGAGCTG 417
||.|| || |||||||||||||..|||.|..|.||.|||||.
BL01876 379 GAAAAGCCTGGTTCA--TTGCAGTATCAAAGCGAATCATCAGAGGAGCTT 426
BSNT_02953 418 TTTCCCG--------------AAACGAATGA-GAAGCATAAAGAATAG 450
|.|||.| |||| |.|| ||||.||||
BL01876 427 TATCCGGTTACCCACTCTAAAAAAC--AGGACGAAGAATAA------- 465
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