Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00689 and BL01868
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:19
# Commandline: needle
# -asequence dna-align/BSNT_00689___glcU.1.5803.seq
# -bsequence dna-align/BL01868___glcU.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00689___glcU-BL01868___glcU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00689___glcU-BL01868___glcU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00689___glcU
# 2: BL01868___glcU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 893
# Identity: 613/893 (68.6%)
# Similarity: 613/893 (68.6%)
# Gaps: 64/893 ( 7.2%)
# Score: 2018.5
#
#
#=======================================
BSNT_00689___ 1 ATGGATTTATTATTGGCTCTTCTCCCGGCTTTGTTTTGGGGGAGCATTGT 50
|||||..|.||.||.||..||.|.||.||..|.||.|||||.|||||.||
BL01868___glc 1 ATGGACATTTTCTTAGCGATTTTACCAGCGATTTTCTGGGGAAGCATCGT 50
BSNT_00689___ 51 TCTCTTCAATGTGAAATTAGGCGGCGGGCCGTACAGCCAGACACTGGGAA 100
.|||||.|||||.||..|.||.|||||.||||||||||||...||.||.|
BL01868___glc 51 GCTCTTTAATGTAAAGCTTGGGGGCGGACCGTACAGCCAGGTGCTCGGCA 100
BSNT_00689___ 101 CGACGATCGGGGCACTCATTGTTTCTATCGTTATTTACTTTTTTGTTCAG 150
|.||..||||.||..|.|||.||||.||||..||.|||||..|.||.|||
BL01868___glc 101 CAACATTCGGCGCTTTAATTTTTTCAATCGGAATCTACTTCGTCGTCCAG 150
BSNT_00689___ 151 CCCGTTCTGTCACTTCGCATTTTTATTGTTGGAATCGTATCCGGCTTATT 200
||.|...|.||.|..||.||.|||...||.||..||||.|||||..||||
BL01868___glc 151 CCTGAATTATCCCCCCGGATATTTGCCGTCGGCGTCGTTTCCGGACTATT 200
BSNT_00689___ 201 TTGGTCACTTGGACAGGCCAACCAGCTGAAAAGCATTCAAT-TGATGGGC 249
||||.|.||.||.|||.||||.||||||||||||| ||.|| ||||.|||
BL01868___glc 201 TTGGGCGCTCGGCCAGACCAATCAGCTGAAAAGCA-TCGATCTGATCGGC 249
BSNT_00689___ 250 GTGTCGAAAACAATGCCGATTTCCACAGGAATGCAGCTCGTTTCCACCTC 299
|||||.|||||.||||||||.||.|||||..|.||||||||.|||||.||
BL01868___glc 250 GTGTCTAAAACGATGCCGATCTCAACAGGGCTTCAGCTCGTATCCACTTC 299
BSNT_00689___ 300 ATTGTTCGGTGTGATCGTGTTCCGCGAATGGTCAACACCGATTGCGATTA 349
..||||.||.|||.|.||.||||..||.|||.|.||..|.||..||||
BL01868___glc 300 TCTGTTTGGGGTGCTTGTTTTCCATGAGTGGGCGACGACAATCTCGAT-- 347
BSNT_00689___ 350 CG--CTTGGCGTTCTCGCTTTGATCTTTATCATTGTGGGAATCATTCTCA 397
|| ||.||||||||.||..||||.||||||||.|||||||||.|.||.|
BL01868___glc 348 CGTTCTCGGCGTTCTGGCGCTGATTTTTATCATCGTGGGAATCGTGCTGA 397
BSNT_00689___ 398 CGTCCTTGGAAGA-------TAAGAATGATAAAAAAGAG---------GG 431
|.||..||||||| .|| ||||.|||| ||
BL01868___glc 398 CATCGCTGGAAGACCGCAGCCAA-------AAAACAGAGGAAAAAACCGG 440
BSNT_00689___ 432 CGAGCCAAGCAATTTGAAAAAGGGCATTTTGATTCTCCTTGTTTCGACTC 481
||| || |||||||.||.||..|||||.|.||..||||.||..
BL01868___glc 441 CGA------CA---TGAAAAAAGGAATCGTGATTTTGCTGATTTCAACAT 481
BSNT_00689___ 482 TTGGTTATTTGGTTTATGTAGTCGT-----GGCTAGATTATTCAATGTGT 526
|.||.|||.|.||.|||||.||||| ||| ||.||.| |||
BL01868___glc 482 TCGGCTATCTCGTGTATGTCGTCGTCGTCCGGC----TTTTTGA---TGT 524
BSNT_00689___ 527 C--CGGCTGGTCCGCGCTGCTGCCACAGGCAATTGGCATGGTGGTCGGGG 574
| |||||||.|.||.||..|.||.|||||..|.||||||||.|.|||.|
BL01868___glc 525 CAGCGGCTGGGCGGCTCTTTTTCCTCAGGCTGTCGGCATGGTTGCCGGCG 574
BSNT_00689___ 575 GGTTAGTTTTAACCTATAGACACAAACCCTTTAACAAGTATGCGATCAGA 624
|.||..|.||.||.|..||.||.||.||.|||||....||.|..||||.|
BL01868___glc 575 GTTTGATCTTGACATTCAGGCATAAGCCGTTTAATTTTTACGTCATCAAA 624
BSNT_00689___ 625 AATATTCTCCCAGGGTTAATCTGGGCAGGCGGAAATATGTTTTTGTTTAT 674
|||||..|.||.||.|||||||||||||..|||||.||||||||.||.||
BL01868___glc 625 AATATCATTCCTGGTTTAATCTGGGCAGCGGGAAACATGTTTTTATTCAT 674
BSNT_00689___ 675 TTCTCAGCCGCGAGTCGGCGTTGCAACGAGCTTTTCCCTTTCACAAATGG 724
.||.||||||||.||||||||.||.||.||.|||||.||.|||||.||||
BL01868___glc 675 CTCCCAGCCGCGGGTCGGCGTAGCGACCAGTTTTTCGCTATCACAGATGG 724
BSNT_00689___ 725 GAATTGTCATTTCTACGCTCGGCGGTATTTTCATCCTGC---GTGAAAAG 771
|.||.|||||.||.|||||||||||.||| ||.|||| |.||||||
BL01868___glc 725 GGATCGTCATCTCAACGCTCGGCGGCATT---ATTCTGCTCGGCGAAAAG 771
BSNT_00689___ 772 AAAACGAAACGTCAGCTAATAGCAATTGCGATCGGGATTATCCTGATTAT 821
|||||.||.||.|||||.||.|..||.||.|||||.||.||.|||||..|
BL01868___glc 772 AAAACAAAGCGGCAGCTGATCGGTATCGCCATCGGCATCATACTGATCGT 821
BSNT_00689___ 822 TGCTGCCGCCGTATTCTTAGGAATCGCCAAAACAAATTCATAA 864
.||.||||.|||.||..|.||.|||||.|||.| ||.|
BL01868___glc 822 CGCAGCCGGCGTTTTGCTGGGCATCGCAAAAGC---TTAA--- 858
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