Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03012 and BL01865
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_03012___yngD.1.5803.seq
# -bsequence dna-align/BL01865___yngD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03012___yngD-BL01865___yngD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03012___yngD-BL01865___yngD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03012___yngD
# 2: BL01865___yngD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1270
# Identity: 857/1270 (67.5%)
# Similarity: 857/1270 (67.5%)
# Gaps: 137/1270 (10.8%)
# Score: 2675.5
#
#
#=======================================
BSNT_03012___ 1 ATGTATCATTTATATTCACATAACGACTTGGACGGAGTAGGATGCGGAAT 50
|||||||||||.|||.|.||.|||||||||||||||||.||.||||||||
BL01865___yng 1 ATGTATCATTTGTATACTCACAACGACTTGGACGGAGTCGGCTGCGGAAT 50
BSNT_03012___ 51 CGTAGCAAAATTGGCGTTCGGAAAAGACGTAGAGATCCGGTATAACTCTG 100
..|.||||||.||||.||.||..||...||.|||.||||.||.||.||.|
BL01865___yng 51 TCTCGCAAAAGTGGCTTTTGGCGAACGGGTCGAGGTCCGCTACAATTCGG 100
BSNT_03012___ 101 TCAACGGCTTAAACGC-ACAGGTGCA--------GTACTTTTTAGA---- 137
|||.||| ||.| ||| |||| || |||||.||
BL01865___yng 101 TCACCGG-----ACTCGACA--TGCAAGTCGGGCGT--TTTTTGGAGCGG 141
BSNT_03012___ 138 --AAAAGCGAAGGAGAGCAACAGACAGGACGCGTTATTCATCACCGATCT 185
|||||..|| |||..||||| ||.||.|...|.||.|||||.|| ||
BL01865___yng 142 ACAAAAGGCAA--AGAAAAACAG-CATGAAGGCCTGTTTATCACGGA-CT 187
BSNT_03012___ 186 CG-CCGTCAATGAAGAAAACGAAGAGAGATTGAATGAGTATGTTCATGCA 234
.| ||||..||.|||||||.||.||.||..||.|..|.||||...|.||.
BL01865___yng 188 TGTCCGTTCATCAAGAAAATGAGGAAAGGCTGGACCAATATGCGGAAGCG 237
BSNT_03012___ 235 GGGGGCAAAGTGAAGCTCATTGACCATCATAAAACAGCCCTTCATTTGAA 284
|||||.||.||.||.||.||.|||||.||||||||.||.|||||||||||
BL01865___yng 238 GGGGGAAAGGTCAAACTGATCGACCACCATAAAACTGCGCTTCATTTGAA 287
BSNT_03012___ 285 TGA-----------GCATGAATGGGGATTTGTCCAGGTGGAATACGATGA 323
||| |||||| |..|.||..||||.||.||
BL01865___yng 288 TGAACGCCCTTGGGGCATGA-----------TAAAAGTTCAATATGAGGA 326
BSNT_03012___ 324 TGGAAGGCTCACATCCGCGACATCGCTTTTATATGGCTATCTCGTTGAAA 373
|||.||||||.|.||.|||||.||.|||||.||||..||..|..|.||.|
BL01865___yng 327 TGGCAGGCTCGCTTCAGCGACTTCTCTTTTCTATGAATACTTAATAGACA 376
BSNT_03012___ 374 ATGGCTTCAT--GAAACCGACAAACGCCTTAGATCAATTCACAGAGCTCG 421
|.|||..||| ||.| ||||||.||..|.|||||.|||...||.||||
BL01865___yng 377 ACGGCCACATTCGAGA--GACAAAAGCGATGGATCAGTTCGTCGAACTCG 424
BSNT_03012___ 422 TCCGCCAATACGATACATGGGAGTGGGAGCGGTACG------ATCAAAAA 465
|.||||..||.|||||||||||.|||||.|.| ||| .||.||
BL01865___yng 425 TACGCCTCTATGATACATGGGAATGGGAACAG-ACGGGCGCTCTCGAA-- 471
BSNT_03012___ 466 CAGGCAAAGCGGCTTAATGATCTTTTCTTTTTGCTGTCAATCGATGAATT 515
||.||.||.||.|||||.||.||.|||.||.|.||.|||||.|||||
BL01865___yng 472 ---GCGAAACGCCTGAATGACCTGTTTTTTATGGTATCCATCGACGAATT 518
BSNT_03012___ 516 TGAAGCAAAAATGATCCAGCGCCTTTCCG--CGCATGACGAATTTTTCTT 563
|||.|.|||||||||||.|||||||...| .|| ||||..||||..||
BL01865___yng 519 TGAGGAAAAAATGATCCGGCGCCTTAAAGAAAGC--GACGCGTTTTCATT 566
BSNT_03012___ 564 CGATGATTTTGAAGAAAAACTGCTT-GATTTAGAAGACGAAAAAATCGAG 612
.|||||.||.|||||||||.| ||| |||.|.|||||.||||||||.||.
BL01865___yng 567 TGATGAATTCGAAGAAAAAAT-CTTGGATATGGAAGAAGAAAAAATTGAA 615
BSNT_03012___ 613 CGCTACCTCCGCAGAAAGAAA---AGGGAAATGGTACAAACCTTTGTTCA 659
||.||..||||||| |||| .|||||||.||.||||||||..||.|
BL01865___yng 616 CGGTATATCCGCAG---GAAACGGCGGGAAATCGTTCAAACCTTCATTAA 662
BSNT_03012___ 660 CGAACACTGTGTAGGCATCGTTCACGCTGAATCGTACCATTCAGAGCTGG 709
.|..|||||.||.||||||||.||.||.|||||.||.|||||||||.|||
BL01865___yng 663 TGCGCACTGCGTCGGCATCGTGCATGCCGAATCCTATCATTCAGAGGTGG 712
BSNT_03012___ 710 GGAACAGGCTAGGTAAAGATAAC----CCGCACCTCGATTACATTGCGAT 755
|||||...||.|| ||.||| ||||||||.||.||.||.||.||
BL01865___yng 713 GGAACGAACTCGG----GAAAACGTATCCGCACCTAGACTATATCGCCAT 758
BSNT_03012___ 756 TTTGAGTATGGG-GTCAAAACGAGTCAGTCTCCGCACCATTCATGATCAC 804
.||.|.|||||| |.||||| .|||.||.||.||||||||.||||||.|.
BL01865___yng 759 CTTAAATATGGGCGGCAAAA-AAGTGAGCCTTCGCACCATCCATGATGAA 807
BSNT_03012___ 805 ATCGATGTGTCAGAAATCGCCGGC-CGATATGGCGGCGGAGGGCATGCAA 853
|..|||||.||||||||||||||| || |..|||||.||.||.|||||.|
BL01865___yng 808 ACAGATGTATCAGAAATCGCCGGCACG-TTCGGCGGAGGCGGCCATGCCA 856
BSNT_03012___ 854 A---AGCG----TCCGGCTGTTCAATAACCGATGAAGTATTCGAGTTGTT 896
| |||| .||.|||| ||.|||||||..|||.||.|||.
BL01865___yng 857 AGGCAGCGGGGTGCCCGCTG-------ACAGATGAAGCGTTCAAGCTGTA 899
BSNT_03012___ 897 TGTAGCTGAAGC-TTTCCGCATTGATCCTGTACGGCCGGATGCTTTCCGT 945
||||.|||||.| ||||||| |.||.||..|..|..|.|||||.||....
BL01865___yng 900 TGTAACTGAACCGTTTCCGC-TGGAGCCCTTGAGAGCAGATGCCTTTAAA 948
BSNT_03012___ 946 AACATCTATAATCTAAAGGGATCTGCGA--ATGGATCA----TTATATGA 989
|||.||||||||.|||| .|..|.||| |.|| || ||||.|.|
BL01865___yng 949 AACGTCTATAATGTAAA--AAAGTCCGACTACGG--CAGCCTTTATGTCA 994
BSNT_03012___ 990 AAA---TCGAGCACAAATGAGATTTTTTCT-TTTCCCTTTAGAC---AAC 1032
|.| .||||.||.| .|||||||| ||||| ||| | ||.
BL01865___yng 995 ACAGGGACGAGGACCA-----GTTTTTTCTCTTTCC---TAG-CGCAAAT 1035
BSNT_03012___ 1033 GAATGGAATATTCAAATTAACGGAGAAACCCAAGACGAAACATTCGCAGC 1082
|..|||||.||||||.|.|||||.|...|.||..|.||.||||||.|..|
BL01865___yng 1036 GGCTGGAACATTCAATTAAACGGCGTGGCTCAGCATGAGACATTCACTTC 1085
BSNT_03012___ 1083 GTTTGAAGAGGCAGAATGGTTTATTAAGAGAAATTATGCCGCATCGCTCG 1132
.||.|||||||||||..||||.|||||.||||||||.||.||||.|||||
BL01865___yng 1086 ATTCGAAGAGGCAGAGCGGTTCATTAAAAGAAATTACGCTGCATGGCTCG 1135
BSNT_03012___ 1133 TGCGGGATGAAGTGTTTGTCGCATTTTTAGCGGAGAATCTGAAGCTGGCA 1182
.|.|||||||||..||||||..||.|||...|.||.|..||||.|||||.
BL01865___yng 1136 CGAGGGATGAAGCATTTGTCCAATATTTGATGCAGCAGGTGAAACTGGCG 1185
BSNT_03012___ 1183 AATCAACATCGGAAG--TAA 1200
|.||| |.||..|| |||
BL01865___yng 1186 ATTCA--AACGACAGGCTAA 1203
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