Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00983 and BL01862
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_00983___ydhC.1.5803.seq
# -bsequence dna-align/BL01862___ydhC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00983___ydhC-BL01862___ydhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00983___ydhC-BL01862___ydhC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00983___ydhC
# 2: BL01862___ydhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 828
# Identity: 393/828 (47.5%)
# Similarity: 393/828 (47.5%)
# Gaps: 300/828 (36.2%)
# Score: 740.0
#
#
#=======================================
BSNT_00983___ 1 ---ATGGACGATTTTAAATTAGATAAGCCGACTCCCTACTACCTGCA--A 45
|.| |||| ||| |.|.||.|||| .
BL01862___ydh 1 GTGAAG-----TTTT-------------CGA-----TCCAACGTGCAGTC 27
BSNT_00983___ 46 TTTTATAA---------CCAGC------TAAAAAAAATGATCTTCAACG- 79
|.||||.| |||.| |||||.|.|||||..|.||.|
BL01862___ydh 28 TCTTATCATGATCAAGTCCATCATTATTTAAAAGATATGATTATTAAAGG 77
BSNT_00983___ 80 -GGACTTTTAAGCCTGGGGAACGGATAAATGAAACACAGCTGGCGAA-AA 127
||| |.|.||||.||.||||||||..|||||.|..|..|.||.|| .|
BL01862___ydh 78 AGGA--TATCAGCCCGGCGAACGGATCTATGAATCCAAAATCGCCAAGGA 125
BSNT_00983___ 128 GCTTTGGC--GTCAGCCGC-TCTCCGATAAGGGAAGCCATGCGATTGCTT 174
||| || ||.|||||| .|.||| |.||.||.||.||.||....|||
BL01862___ydh 126 GCT---GCAAGTGAGCCGCAGCCCCG-TCAGAGAGGCGATTCGGACACTT 171
BSNT_00983___ 175 GAGAAAGATGGTTTGTTA---AAAGCGGATGA--CCGAAAT--GGGTTTT 217
||..||||.||..||||| |.||..|||.| |..|||| ..||||.
BL01862___ydh 172 GAACAAGAAGGCCTGTTATTGATAGATGATAAATCAAAAATTACAGTTTA 221
BSNT_00983___ 218 CGATCACGTCGTTAACGGCA---AAAGATGTAGATGAGATTTATAAA--- 261
.|| |.||.|| ||||||.|.||.||.||.||..||
BL01862___ydh 222 TGA----------ACCGACAATCAAAGATCTTGAAGAAATATACCAATGC 261
BSNT_00983___ 262 -ATCAGAATTCCGCTGGAGCAGCTGGCAGTCGAATTAGTCATAGACGAAG 310
.|||| .||||.||....|||||.|| .||.|.|.|||..
BL01862___ydh 262 CGTCAG----GCGCTCGAATCCCTGGCCGT-------TTCTTTGGCGACT 300
BSNT_00983___ 311 CG----------GACGAAGAA---GAGCTGACCATACTCGAAAAACAGCT 347
|| .|.|||..| ||||| |||...||||| .|||
BL01862___ydh 301 CGCCTTGCCTCTAATGAAACACTGGAGCT---CATTTCCGAAA---CGCT 344
BSNT_00983___ 348 ---TG--------AAGAAACAGAGAAAGCCATTCGCAACGGCACGGAAGA 386
|| |||.|.|||| |||||| |||.
BL01862___ydh 345 CTCTGAGGCGCATAAGCACCAGA-AAAGCC----------------AAGG 377
BSNT_00983___ 387 TACGGA-------AAT------CATTCGTTTAAA----CCAAAAATTTCA 419
|.|||| ||| | ||||..|||| | |||||||
BL01862___ydh 378 TCCGGAGTCGGCTAATGCTCTGC-TTCGCCTAAATACGC----AATTTCA 422
BSNT_00983___ 420 TGAGCTGC--TGGTTGATTTCAGCCATAACAGACATTTG---AAAAATTT 464
||| ||| |..|.||....|||.|.|||..||...|| |||.|..|
BL01862___ydh 423 TGA--TGCCATCATCGAAGCGAGCGAAAACGAACGCCTGCAAAAACAGCT 470
BSNT_00983___ 465 GCTTGA---------GCATGTAAATGACCTGATTCATTTTT--------G 497
|||||| || ||||| ||||| |
BL01862___ydh 471 GCTTGATTTACGGTCGC-------TGACC-------TTTTTCTACCGGAG 506
BSNT_00983___ 498 CAGAATTCTT-AATTATACCGGCGACCACCGCGCA-----GAAA------ 535
||.||..||| || |.||||| .||||| ||||
BL01862___ydh 507 CAAAAACCTTGAA--AAACCGG-------AGCGCACTCTTGAAATCATCA 547
BSNT_00983___ 536 ------------CGATACTGCGTGAGCAC-CGCAGGATATTTGAAGAAGT 572
.|||.|||||| ||| .|||||| .||||.|
BL01862___ydh 548 ATCAGCACGAGGAGATTCTGCGT---CACATGCAGGA------CAGAAAT 588
BSNT_00983___ 573 GAAAAAGAAAAACAAAGAAGCAGCCAAACAACATGTGCTGGCTCATTTCA 622
| ||..|.||||||||.|| |||
BL01862___ydh 589 G----------ACGCAAAAGCAGCCGAA-------------------TCA 609
BSNT_00983___ 623 ATCATGACTGTGAGCAT-TTGAAGCA------TG-TGCTTGAAGAAGGT- 663
||.|.|| ||||| |.||.||| || |.|||.||..||||
BL01862___ydh 610 ATGAGGA-----AGCATATAGAGGCAGACCTTTGCTACTTAAAAGAGGTG 654
BSNT_00983___ 664 ------AAAGAGAATTGA---------- 675
|.| ||.|.||.
BL01862___ydh 655 TTGTTCAGA-AGCAGTGCCGCACGCTAA 681
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