Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00695 and BL01861
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_00695___ycnK.1.5803.seq
# -bsequence dna-align/BL01861___ycnK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00695___ycnK-BL01861___ycnK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00695___ycnK-BL01861___ycnK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00695___ycnK
# 2: BL01861___ycnK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 643
# Identity: 374/643 (58.2%)
# Similarity: 374/643 (58.2%)
# Gaps: 140/643 (21.8%)
# Score: 923.0
#
#
#=======================================
BSNT_00695___ 1 ATGCTTCCGATTAATAGACAGCAACACATACTGAAGTGGCTGAAAGAAGA 50
|||||.||||||||.|||..|.|.||.||..||...|||.|.||||||||
BL01861___ycn 1 ATGCTACCGATTAAAAGAAGGGAGCAGATTTTGGCTTGGATCAAAGAAGA 50
BSNT_00695___ 51 AGGCTCGCTTAGAATTTCTGACATCAGCG-CAAGGTTCGGCGTTTCGGAA 99
||..||.||..|.|||||.||.|| ..|| .||||.|...|||.||.|||
BL01861___ycn 51 AGAATCTCTGCGCATTTCGGAAAT-TTCGAAAAGGCTGAACGTCTCTGAA 99
BSNT_00695___ 100 ATGACGGTATATAGAGATGTCAATCAGCTGGTTCAGTCAAA---TCAGGT 146
|||||.||.||..|.||..|.||.|.|||.|||.| ||| .|||||
BL01861___ycn 100 ATGACCGTTTACCGCGACATTAAACCGCTCGTTGA---AAACGGGCAGGT 146
BSNT_00695___ 147 CATAAAAACCGCCGGCGGCATCACGCTCCCCGTCCGAACACCTCAAA--- 193
|||.||.|||||.|||||.||.||||| .||||...|.||
BL01861___ycn 147 CATCAAGACCGCAGGCGGAATTACGCT--------AAACAAGCCGAAGCA 188
BSNT_00695___ 194 -CAGATCATATGTGCAGCTATTGCTT--------GAA----GCCAG--TC 228
|||.| ||.|||||| ||||.| ||| |.||| ||
BL01861___ycn 189 GCAGCT----TGGGCAGCT-TTGCGTCGTTTGCGGAAAAGGGGCAGGTTC 233
BSNT_00695___ 229 AATCAAGCTCATTCGGTTCAGCTGATTACGGTAAACCAAGAC------AT 272
.|.||| |.|.|| ||..||| ||.||..|.||| ||
BL01861___ycn 234 ---GAGGCT--TGCCGT---GCAAATT---GTCAAAAACGACAGCCAAAT 272
BSNT_00695___ 273 TGAACAGCTATGCTGCGCACATTGCGCGTTTTTGCGTTACGCGGA--TAA 320
|||||||.|.|||||||..||||||||..|..|.||.||.|.|.| |.|
BL01861___ycn 273 TGAACAGTTTTGCTGCGTGCATTGCGCAATGCTCCGCTATGAGAAAGTGA 322
BSNT_00695___ 321 AACGGAAGAGGTTTCACACTTGATTTGCAGAGATTTTCTGTTACAGACAA 370
|| ||.||.||.|||||..|.||.|||||.||||||.||.|..|.||.|
BL01861___ycn 323 AA--GATGATGTATCACAGATTATCTGCAGGGATTTTTTGCTGGATACGA 370
BSNT_00695___ 371 CCGTCAGTGCC---GGT-TCGGCTTATTTCGTCGTAAATGCTGA-----A 411
|..||||.||| |.| .||.|||.||.| |..||.|.|| |
BL01861___ycn 371 CGATCAGCGCCAAAGCTGCCGTCTTTTTGC----TGGATACAGATCTTCA 416
BSNT_00695___ 412 TTGAACCTGCACTGCTGCCAGCCGCAGGC-CATTCCGTTTGCGACGCTCG 460
|| ||.||||||||.|||||||.|| | |||.||| ||||
BL01861___ycn 417 TT-----TGAACTGCTGCGAGCCGCATGCGC--TCCCTTT----CGCT-- 453
BSNT_00695___ 461 ATC--ATGCCGAA---CG---ATTTCAAAAAGGATTCGGCGG--CGCCGT 500
|| |.||.||| || |||..|||||||.||.||||| .||.||
BL01861___ycn 454 -TCTGAAGCAGAAGCGCGGAAATTCAAAAAAGGCTTTGGCGGACAGCTGT 502
BSNT_00695___ 501 ---------------CCGCACTT-TCGACCAAGCGCTGGAAGAC-ATGCT 533
||||.||| |.|.||| |||.|| |||
BL01861___ycn 503 TATCGTTTGACGATGCCGCGCTTCTGGTCCA-------GAAAACGATG-- 543
BSNT_00695___ 534 CAAAGACAGAAAGAAACGCTGCACCTGCACC---AAGAAATAA 573
|||||..|||| |||||.| ||||.||.|
BL01861___ycn 544 ----------AAGAACAGCTG---CTGCAGCCTGAAGACATGA 573
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