Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00693 and BL01860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_00693___ycnJ.1.5803.seq
# -bsequence dna-align/BL01860___ycnJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00693___ycnJ-BL01860___ycnJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00693___ycnJ-BL01860___ycnJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00693___ycnJ
# 2: BL01860___ycnJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1802
# Identity: 1084/1802 (60.2%)
# Similarity: 1084/1802 (60.2%)
# Gaps: 340/1802 (18.9%)
# Score: 2710.5
#
#
#=======================================
BSNT_00693___ 1 ATGAAGCGAAACAGATGGTGGATCATTC-------TTCTGCTTTTTCTT- 42
|||||..|| |.|.||.|| |||||..|.|||||
BL01860___ycn 1 ATGAAAAGA----------GCAACACTCTGGGCAGTTCTGGCTGTTCTTT 40
BSNT_00693___ 43 -----GTTTTCCTGCCGAAAACAAGC-TTTGCTCACGCCTATATTGTCAA 86
.||.|.||||| ||||...|| |||||||||||.|||||.||..|
BL01860___ycn 41 GTACCATTCTGCTGCC-AAAAGCCGCTTTTGCTCACGCTTATATCGTACA 89
BSNT_00693___ 87 ATCTTCACCTGGGGAAAA-CAGCGAATT--AAAAAGCGCCCCTGCGCAGG 133
|||..|.||||..||||| ||| ||..| ||||||||||
BL01860___ycn 90 ATCAACTCCTGCTGAAAATCAG-GAGCTGAAAAAAGCGCC---------- 128
BSNT_00693___ 134 TG--GAA------ATCGAATTTAATGAACCGGTTGAAGAA-GGGTTTCAT 174
|| ||| ||||||||.||||||.||.|| .|||| |||||||||
BL01860___ycn 129 TGAAGAAATTAAGATCGAATTCAATGAAGCGATT-CAGAACGGGTTTCAT 177
BSNT_00693___ 175 TACATTAAAGTCTTTAATTCAAACGGCGACCGTGTGGATACGGACAAGAC 224
|..||.|..|||...|||||....||.||.||.||.|||.|.|.|||.||
BL01860___ycn 178 TCGATAACGGTCAGAAATTCGTCGGGTGAACGGGTAGATTCCGGCAAAAC 227
BSNT_00693___ 225 TGAAATCAA-----AAAAGATAATCATCACATCATGACAGTGAAGCTGAA 269
.||||||.| ||||...|| |.||||||||.||.||||||||
BL01860___ycn 228 GGAAATCGACCCCCAAAACGCAA-----AGATCATGACCGTCAAGCTGAA 272
BSNT_00693___ 270 ---GAAG---AATCTGCCTCATGATGTGTACAGAGCGGAATGGAATGCCG 313
|||| || ..|||||.|.|||...||.|||||||..||||
BL01860___ycn 273 ACCGAAGTTAAA------GGATGATATCTACTCGGCCGAATGGAGAGCCG 316
BSNT_00693___ 314 TATCCGCGGACGGGCATCCTGTTTCTGGCGTCATTCCGTTTAGTATTGGG 363
|||||||.|||||.||||||||.||.|||...||.||.||||||| |.||
BL01860___ycn 317 TATCCGCAGACGGTCATCCTGTATCAGGCACGATCCCTTTTAGTA-TCGG 365
BSNT_00693___ 364 AAA--------GC-GGATGGCG---GATTCAGCAGCCAAA--AAGCAGCC 399
||| || ||.||.|| ||| ||||.||| |||||
BL01860___ycn 366 AAACATTCAAGGCGGGCTGCCGAAAGAT----CAGCAAAATCAAGCA--- 408
BSNT_00693___ 400 GACTCAGCTCTGAATCCGGGAACAGCAGCAGATCG--------CGCG--A 439
||||..||| |||| ||||.| |.|||| |||| .
BL01860___ycn 409 ---TCAGGCCTG---CCGG---CAGCCG-ATATCGTCATTGAACGCGTCC 448
BSNT_00693___ 440 TTCTGTATACAGCCTTATCTCTGTTTATCGGAACGGTTTTCTTCCATCTT 489
||.|||||||.|..||.||.|||||.||.|||.|.|.|.|.||.||.||.
BL01860___ycn 449 TTTTGTATACCGGTTTCTCCCTGTTCATGGGAGCCGCTCTTTTTCAGCTC 498
BSNT_00693___ 490 TTCTGG--------TATAAAGGGAAATCAGAACAGTTCGTCAAACGGACG 531
.||||| |..|||.|| |.|..|.|.| |.|||| |.|
BL01860___ycn 499 GTCTGGCACCGACCTGAAAACGG----CTGGCCGGGT-GACAAA---AAG 540
BSNT_00693___ 532 AGACGTATCCTG-ACCGG--CTCGA---TCGCAGC----ATT----GGGG 567
.|.||| ||| |.||| |.||| |.|| || ||| ||||
BL01860___ycn 541 CGCCGT---CTGAAGCGGATCACGAATGTGGC-GCTCTTATTGACAGGGG 586
BSNT_00693___ 568 CTGGCGCTTTTGCTTCAGCTTCCGATTCAGACAAAAGCGAACGCAGGCGA 617
|| ||..|..|..|||||||.||..|.||.||||||.|.||||||||||.
BL01860___ycn 587 CT-GCCATCATCATTCAGCTGCCACTGCAAACAAAAACAAACGCAGGCGT 635
BSNT_00693___ 618 CGGCTGGGGCAGCGCATTCCAGCC-GGGCTACATCAGAGAAACACTGTTT 666
...||||..|.|.||.||.||||| ..||| ..|.|.||||||.|| |.|
BL01860___ycn 636 TTCCTGGATCGGGGCTTTTCAGCCTTCGCT-TTTAAAAGAAACGCT-TCT 683
BSNT_00693___ 667 G-AGACAGCAGGCGGCTCCATTTG---GATCATACAGGCCGCTCTGTTCG 712
| |.||..|.|||||..|..|.|| ||||| ||| |||
BL01860___ycn 684 GAATACGACGGGCGGAACGCTGTGGCTGATCA-ACA-----------TCG 721
BSNT_00693___ 713 TGCTCCTCGCACTGTCTGTCATTC-CTGCG-ATACGGAAAAACCGCTTTT 760
...||.||||..||..||| .||| ||.|| ||| |||||
BL01860___ycn 722 CCATCATCGCCTTGCTTGT-TTTCTCTTCGAATA--GAAAA--------- 759
BSNT_00693___ 761 CATCCTTTGGCTATTGGATAGCGCCGCTCAT-------TTTCTTTTT--C 801
||| .||.|.|||| ||.||.| ||.|||||| |
BL01860___ycn 760 --------GGC--CTGAAGAGCG-CGATCTTGAGCCTGTTCCTTTTTGCC 798
BSNT_00693___ 802 GGTCTCCTGCTTGCCAAGGCGTTTACCGGGCATGCCGCTGTCGTTGA--- 848
||.||..||.|.|.|||..||.|...|||.||||||||| |||..||
BL01860___ycn 799 GGACTATTGTTCGTCAAATCGCTCGACGGCCATGCCGCT-TCGACGAGCG 847
BSNT_00693___ 849 -AG---AAAAAACGGTCGGCATTTTGATGGATTTCCTTCATTTAACTTCC 894
|| |.|..||..||| .||||.|.|||.|.|||.|.|.|.||
BL01860___ycn 848 CAGGCTATATGACAATCG------CGATGAACTTCATCCATCTGAATGCC 891
BSNT_00693___ 895 GCTTCCATCTGGGTTGGCGGAATAGCGGCACTCGTTT-TGCTG---CTCT 940
||||||||.|||..|||||||.|.||| ..|||| ||||| .||.
BL01860___ycn 892 GCTTCCATTTGGACTGGCGGACTCGCG----ATGTTTGTGCTGTTTTTCG 937
BSNT_00693___ 941 CAAAAGAATGGAGGCAGCCTGACAAAACGCTCG-CGTGGGAGACGGTCAG 989
.||||||.|||..|.|||||||||||| |.|.| ..|||||.||..|..|
BL01860___ycn 938 GAAAAGACTGGCTGAAGCCTGACAAAA-GTTTGATATGGGAAACCATTCG 986
BSNT_00693___ 990 ACGGTTCTCCCCATGGGCGCTCACT---GCAGTCGGC--GTCATTTTGTT 1034
.||.|||||.||||||||||||.|| |||| ||| .||| |.||
BL01860___ycn 987 GCGCTTCTCGCCATGGGCGCTCGCTTCAGCAG--GGCTACTCA---TATT 1031
BSNT_00693___ 1035 TTCAGGCTTGCTCAATGGATTTTTCATCATTCGTTCAATGGATTCACTGT 1084
.||.|||.|..||||..|.||||||||..|||.|.||.|||||...||||
BL01860___ycn 1032 CTCGGGCCTTTTCAACAGCTTTTTCATTGTTCATACACTGGATAACCTGT 1081
BSNT_00693___ 1085 TCCATACAGCGTATGGCCAAGCTCTTTTAGTGAAAAGCGG-GCTGTTTGT 1133
||...||.||.||.||..||||.||..|.||| |||.||| |||..|..|
BL01860___ycn 1082 TCGGGACGGCTTACGGAAAAGCGCTCCTTGTG-AAATCGGCGCTCGTCCT 1130
BSNT_00693___ 1134 TTTCATGCT-GGTCTTAGGCGCGATTC---ATTTTCTGCTTACCAGAAAG 1179
|.|||||.| ||.| |.||.||..||| ||||||...|| |||||
BL01860___ycn 1131 TCTCATGATCGGAC-TCGGGGCATTTCACTATTTTCGTTTT---AGAAA- 1175
BSNT_00693___ 1180 CAGCGCCGCA----CAGGAATCAGCCGAACGTTGAAAGCGGAGTGGGCAA 1225
|||||||.| |||| .|.||||..||.|||||||.||.|||||..
BL01860___ycn 1176 -AGCGCCGAAACAGCAGG--GCGGCCGTTCGATGAAAGCTGAATGGGCGG 1222
BSNT_00693___ 1226 TC-GGCATCGC--TGTATTGATCACAGCGGCCGTGTTTACAAGCC----T 1268
|| |||.||.| |.|..|||.|||.||| ||||.|| || |
BL01860___ycn 1223 TCGGGCTTCTCATTCTGCTGACCACGGCG-----GTTTTCA--CCAATAT 1265
BSNT_00693___ 1269 GCCAAGCCCGCCTGAGCCAGC-GCCGGAACCGTTCTACCAAACCAA--AG 1315
.|||||.|||||.|.||| || ||||.|.||.|||....|.||.|| ||
BL01860___ycn 1266 TCCAAGTCCGCCCGCGCC-GCTGCCGCAGCCTTTCAGTGAGACGAAGCAG 1314
BSNT_00693___ 1316 CGATTGA--GAACGGACAAAGCG-TTTCTCTCAGCATCAGCCCAAACCAG 1362
| ||| ||| ||| ||..|| |.||.|||.|.||||||||||||..|
BL01860___ycn 1315 C---TGACGGAA-GGA-AATACGCTGTCACTCCGAATCAGCCCAAACATG 1359
BSNT_00693___ 1363 CCCGGAAAAAATGTTTTTGAGCTGCGTGTCACCG------ACCATAACGG 1406
||.||...||||...||||| .||||||| ||...||.||
BL01860___ycn 1360 CCGGGCTCAAATACGTTTGA------AGTCACCGTCAGAAACAGAAAAGG 1403
BSNT_00693___ 1407 AGATCCCGTGAAAAACATCCAGCAAATCACGTTAACCGTTTATAAAACAG 1456
|||...|||.|||.|.|||||..||||....|||||||||.|.|||||.|
BL01860___ycn 1404 AGACGTCGTCAAAGATATCCAAAAAATTGAATTAACCGTTGAGAAAACCG 1453
BSNT_00693___ 1457 GTC-TGTCAGGCAGCGAAAACAAAAGCACCTTTA----CATTAAAAGAAA 1501
|.| |.||.||.| .||.||..|||||||.||.| ||..||||..||
BL01860___ycn 1454 GGCTTTTCGGGGA-TGACAAGGAAAGCACGTTCAGCCTCAGCAAAAATAA 1502
BSNT_00693___ 1502 AAACAAAAGGCGTCTTCCAGGATC-AAAACCTGTCGATT--AAT------ 1542
|.|| ||.||.||||| |.| |||| ||| |||
BL01860___ycn 1503 AGAC----GGTGTTTTCCA--AACGAAAA-------ATTTAAATTTAAGC 1539
BSNT_00693___ 1543 GAAAAAGGAAACTGGAAGATCAAAGTCCACGGCCTGACCGGCGAC-TTTA 1591
|||.|.||.|.||||||||||...||.||||| .|.|.|||||.| |||.
BL01860___ycn 1540 GAAGACGGCATCTGGAAGATCCGCGTTCACGG-ATTAACGGCGTCATTTG 1588
BSNT_00693___ 1592 ACGAAATCAATATCATGTTTACAAAG-ACCAATTAA-------------- 1626
|.|||||| |.|.|| ||||.|||.| |..||||||
BL01860___ycn 1589 AGGAAATC-AGAACA-GTTTTCAATGCAAAAATTAATAAAAAGGAGTTTT 1636
BSNT_00693___ 1626 -- 1626
BL01860___ycn 1637 GA 1638
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