Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00692 and BL01859
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:19
# Commandline: needle
# -asequence dna-align/BSNT_00692___ycnI.1.5803.seq
# -bsequence dna-align/BL01859___ycnI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00692___ycnI-BL01859___ycnI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00692___ycnI-BL01859___ycnI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00692___ycnI
# 2: BL01859___ycnI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 716
# Identity: 431/716 (60.2%)
# Similarity: 431/716 (60.2%)
# Gaps: 172/716 (24.0%)
# Score: 1256.0
#
#
#=======================================
BSNT_00692___ 1 TTGTTGAAAAAAATCGCATTGACACTATGTCCGGCTATTGTCGGC--TCC 48
.|||||||||| ||||.||||...||.| || |||
BL01859___ycn 1 ATGTTGAAAAA---------GACATTATGGATGGGT-------GCAATCC 34
BSNT_00692___ 49 ------CTCTTATTCTTTACGGCCCCTGC----CAGCGCGCATGTTTCTG 88
|..||.|.||||.| .||.||| ||||||.|||||..|.|
BL01859___ycn 35 TAGCATCATTTTTGCTTTTC--TCCGTGCCGGTCAGCGCACATGTCACGG 82
BSNT_00692___ 89 TAAAACCGGCTGAGTCTGCTGCAGGCTCTTGGGAAACGTATACAATAAAG 138
||||||||.|.||.||.||.||||||||.||||||||.||.||..|.||.
BL01859___ycn 83 TAAAACCGACCGAATCAGCAGCAGGCTCATGGGAAACATACACTGTCAAA 132
BSNT_00692___ 139 GTTCC--TTCAGAGAAAAATCTGCCGACAACG--------AAGGTTGTCC 178
||.|| || |||||| ||||||| |||||.||.|
BL01859___ycn 133 GTACCGGTT----GAAAAA------GACAACGCCACGATCAAGGTCGTTC 172
BSNT_00692___ 179 TCAAAATGCCGAAGGATGTTGAATTCCAGCAATATGAGCCAATTCCGGGC 228
|||..||||||.|.|.|||||||||.|||||.|||||.||..|.|||||.
BL01859___ycn 173 TCAGCATGCCGGACGGTGTTGAATTTCAGCAGTATGAACCGGTGCCGGGG 222
BSNT_00692___ 229 TGG-----AAGGTTTCCACT--------CAAAAACATGATGACAAATCAG 265
||| ||| |||| ||||||| ||.|| ||
BL01859___ycn 223 TGGAAAACAAG-----CACTGAAACCGGCAAAAAC-----GAAAA---AG 259
BSNT_00692___ 266 TGTC---CGTGACATGGG-AGGCGACTGACGGAGGCATTCAGGAAGGACA 311
|..| .|||||.|||| ||.||| ..||||.|||||||||...||..|
BL01859___ycn 260 TAACAAGGGTGACGTGGGAAGCCGA-AAACGGCGGCATTCAGCCTGGTGA 308
BSNT_00692___ 312 GTTCCAGCAGTTTACCTTTGTTGCCAAAAACCCTGACAAAGCGGAGGAAG 361
.|||||||||||||||||....|||||||||||||||||||...|..|.|
BL01859___ycn 309 ATTCCAGCAGTTTACCTTCACCGCCAAAAACCCTGACAAAGAACAAAAGG 358
BSNT_00692___ 362 CTGCTTGGGACGCATACCAATATTACAAAGACGGCAGCATTGTTGAGTGG 411
|.||.|||.||||||||||||||||.||.|||||||..|||||.||||||
BL01859___ycn 359 CCGCCTGGAACGCATACCAATATTATAAGGACGGCACAATTGTCGAGTGG 408
BSNT_00692___ 412 ACAGGTGACGAGGATGCCGATACACCTCATTCCATTACAAACAT----CA 457
||.|||||.||.||.||||||||.||.|||.|.||.||||.||| .|
BL01859___ycn 409 ACCGGTGATGATGACGCCGATACCCCGCATGCAATCACAAGCATTGTCGA 458
BSNT_00692___ 458 CGTCTGCAAAACAAGTGACA----------GATGAGCACGGGG---CCAC 494
|| |||||||||..| |||| ||||..|||||.| |.||
BL01859___ycn 459 CG-CTGCAAAACTCG-GACACGAAACGGTTGATGCACACGGCGCTTCAAC 506
BSNT_00692___ 495 GAAAACAGAAGACGATTCC---GAAAACT-----CAGGTTC--------- 527
||| |.||.|||.|.|| ||||| | ||| ||
BL01859___ycn 507 GAA---ACAAAACGCTGCCGCAGAAAA-TGAAGACAG--TCAAGGAGGAC 550
BSNT_00692___ 528 ------TTCA----GCT---CTAAACATTACAG-CGAT------TGTGCT 557
|||| ||| ||.| |.|.| |||| .|||||
BL01859___ycn 551 AAGGGATTCAAACCGCTTCCCTGA----TCCTGTCGATCCTCGCCGTGCT 596
BSNT_00692___ 558 GTCT----GCAGCTGCCATTATTTTATCTGTAGCAGCACTT----GTTAA 599
||| |..||||| ||.||.||| ||...
BL01859___ycn 597 -TCTTGGAGGTGCTGC----------------GCTGCTCTTGACAGTGCG 629
BSNT_00692___ 600 GAAAAAGCGTGCGTAA 615
|||||||....|||||
BL01859___ycn 630 GAAAAAGAAATCGTAA 645
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