Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00682 and BL01856

See Amino acid alignment / Visit BSNT_00682 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:19
# Commandline: needle
#    -asequence dna-align/BSNT_00682___ycnE.1.5803.seq
#    -bsequence dna-align/BL01856___ycnE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00682___ycnE-BL01856___ycnE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00682___ycnE-BL01856___ycnE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00682___ycnE
# 2: BL01856___ycnE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 321
# Identity:     201/321 (62.6%)
# Similarity:   201/321 (62.6%)
# Gaps:          66/321 (20.6%)
# Score: 623.0
# 
#
#=======================================

BSNT_00682___      1 ATGATCGTATTACAAGCTTACATCAAAGTAAAACCAGAAAAACGCGAGGA     50
                     |||||||||||.|||||.||.||.||||||||||||||||||||.||.|.
BL01856___ycn      1 ATGATCGTATTGCAAGCCTATATGAAAGTAAAACCAGAAAAACGAGACGC     50

BSNT_00682___     51 ATTTTT---GAGCGAGGCT-CAATCGCTTGTTCAGCATTCAAGAGCTGAG     96
                     .|||.|   .||||    | |||.|||||.||.|.||||||||||||||.
BL01856___ycn     51 CTTTCTCGAAAGCG----TACAACCGCTTCTTAAACATTCAAGAGCTGAA     96

BSNT_00682___     97 GAAGGCAACGCGCAATACGACCTATTCGAAAAAGTAGGCGAA---GAAAA    143
                     |..|||||.||.||.|||.|.||.||.|||.|  || .||||   |..||
BL01856___ycn     97 GCCGGCAATGCCCAGTACCAGCTGTTTGAAGA--TA-CCGAACATGCCAA    143

BSNT_00682___    144 TACATTTGTCATGCTTGAAAAATGGAAAGAT---GAAGCG------GCAA    184
                     ||||||||||||||||||..|||||||.|||   ||.|||      ||| 
BL01856___ycn    144 TACATTTGTCATGCTTGAGCAATGGAAGGATCAAGACGCGCTTGACGCA-    192

BSNT_00682___    185 TGAAATTCCATAACGAAACTGCGCATTTCCAAGGGTTTGTCGCAAAAGG-    233
                             |||||..|.||.|.||||||.||||..||.|| .|||..|| 
BL01856___ycn    193 --------CATAATCAGACAGAGCATTTTCAAGCTTTCGT-TCAAGCGGC    233

BSNT_00682___    234 ------------AAAAGAACTGCTGAGCGCCCCTCTTGATGTTGT----C    267
                                 |..|||||..||||            ||||.||    .
BL01856___ycn    234 GGGCGACCTTTTATCAGAACCCCTGA------------ATGTGGTTAAAA    271

BSNT_00682___    268 CGCACAGAGCTTAGTGAGTAA    288
                     ||||||.|    |..||.|||
BL01856___ycn    272 CGCACACA----ACGGATTAA    288


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