Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00681 and BL01854

See Amino acid alignment / Visit BSNT_00681 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:19
# Commandline: needle
#    -asequence dna-align/BSNT_00681___ycnD.1.5803.seq
#    -bsequence dna-align/BL01854___nfrA2.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00681___ycnD-BL01854___nfrA2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00681___ycnD-BL01854___nfrA2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00681___ycnD
# 2: BL01854___nfrA2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 778
# Identity:     560/778 (72.0%)
# Similarity:   560/778 (72.0%)
# Gaps:          68/778 ( 8.7%)
# Score: 1987.0
# 
#
#=======================================

BSNT_00681___      1 ATGAATGAAGTGATT-AAATCTTTAACAGACCACCGCTCGATTCGCAGCT     49
                     ||||||||||| ||| |||.|.||.|.||||||..|.||.||.|||||||
BL01854___nfr      1 ATGAATGAAGT-ATTGAAAACATTGAAAGACCATAGATCAATCCGCAGCT     49

BSNT_00681___     50 ACATAGATGAGCCTGT-AGCTCAGGAGCAATTGGACCAAATCATTGAAGC     98
                     |.|.|||||||||.|| ||| |..||.||..|||||.|.||.|||.||||
BL01854___nfr     50 ATACAGATGAGCCCGTGAGC-CCTGAACAGCTGGACGACATTATTCAAGC     98

BSNT_00681___     99 GGTGCAATCAGCCCCTTCTTCTATCAACGGACAGCAAGTGACTGTGATCA    148
                     .||.|||.|.||.||...|||.||.|||||.|||||.||.||.|||||.|
BL01854___nfr     99 CGTTCAAGCCGCGCCGAATTCCATTAACGGCCAGCAGGTCACCGTGATTA    148

BSNT_00681___    149 CAGTCCAGGATAAAGAGCGTAAAAAGAAAATCTCCGAGCTGGCAGGCGGC    198
                     |.||.||||||.|.||.||.|||||||||||..||||.|||||.|||||.
BL01854___nfr    149 CGGTTCAGGATGAGGAACGGAAAAAGAAAATTGCCGAACTGGCCGGCGGA    198

BSNT_00681___    199 CAGCCATGGATCGATCAAGCTCCTGTTTTCCTGCTGTTCTGCGCAGATTT    248
                     |||...||||||||.||.||.|||||||||||..||||||||||.||.||
BL01854___nfr    199 CAGGTCTGGATCGAGCAGGCCCCTGTTTTCCTTTTGTTCTGCGCGGACTT    248

BSNT_00681___    249 CAACCGGGCCAAAATTGCGCTTGAAGATCTGCATGATTTCAAAATGG---    295
                     ||||||.||.|||||.||.|||||          ||    ||||.||   
BL01854___nfr    249 CAACCGTGCGAAAATCGCCCTTGA----------GA----AAAACGGCGA    284

BSNT_00681___    296 AA--------ATCACAAATGGATTGGAATCTGTTCTTGTCGGCGCAGTAG    337
                     ||        ||||||.|.|||.|||||||.||.||||||||.||.||.|
BL01854___nfr    285 AACGCTTGCGATCACAGACGGAATGGAATCCGTGCTTGTCGGAGCTGTCG    334

BSNT_00681___    338 ACGCTGGTATTGCCCTCGGCACAGCAACAGCAGCGGCTGAGTCACTCGGA    387
                     ||||.||.||.||||||||.||.||.||||||||.|||||.||..|.|||
BL01854___nfr    335 ACGCAGGCATCGCCCTCGGGACGGCCACAGCAGCCGCTGAATCGATGGGA    384

BSNT_00681___    388 CTTGGCACAGTTCCGATCGGTGCGGTTCGCGGAAACC---CTCAAGAGCT    434
                     ||||||||.||.||||||||.|||||.|||||   ||   |..|||||.|
BL01854___nfr    385 CTTGGCACTGTGCCGATCGGCGCGGTCCGCGG---CCGTGCAGAAGAGTT    431

BSNT_00681___    435 GATCGAACTGCTTGAGCTTCCAAAATACGTGTTCCCTTTATCCGGCCTTG    484
                     ||||.|||||||..|..||||..|||||||.||||||.|..|.||.||||
BL01854___nfr    432 GATCAAACTGCTCAATATTCCTGAATACGTCTTCCCTGTCGCAGGACTTG    481

BSNT_00681___    485 TCATTGGGCATCCTGCCGACCGTTCAGCGAAAAAACCGCGCTTGCCGCAG    534
                     ||.|.||.|||||.||.|||||.||.||.|||||.||||||.|.|||.|.
BL01854___nfr    482 TCGTCGGCCATCCGGCGGACCGCTCCGCCAAAAAGCCGCGCCTCCCGGAA    531

BSNT_00681___    535 GAAGCTGTCAATCATCAG-GAAACTTATTTGAATCAGGAT------GAGC    577
                     .||||.||.|..|| ||| |||||.|||   .|.|.||||      ..||
BL01854___nfr    532 CAAGCGGTAAGGCA-CAGCGAAACGTAT---CAACCGGATTTAAAACCGC    577

BSNT_00681___    578 TGACGTCTCACATTC-AGGCATACGACGAACAGATGTCTGAATACATGAA    626
                     |||          || |.||.|||||.|||.|.||.||.||||||||||.
BL01854___nfr    578 TGA----------TCGACGCGTACGATGAAGAAATATCCGAATACATGAC    617

BSNT_00681___    627 TAAACGGACAAACGGAAAAGAAACAAGAAATTGGTCACAGAGCAT---CG    673
                     .||||||||.||||||.|.|||||||||||.|||||.|||.||||   ||
BL01854___nfr    618 AAAACGGACTAACGGACAGGAAACAAGAAACTGGTCTCAGGGCATATCCG    667

BSNT_00681___    674 CTTCCTACTAT-GAGCGCCTGTACTATCCGCACATCCGTGAAATGCTTGA    722
                     |||..|||.|| .||    ||||||||||.||||||||||||||||||||
BL01854___nfr    668 CTTATTACAATAAAG----TGTACTATCCTCACATCCGTGAAATGCTTGA    713

BSNT_00681___    723 AAAACAAGGATTTAAAGTTGAAAAATAA    750
                     .|||||||||||||||.|.|||.|.   
BL01854___nfr    714 GAAACAAGGATTTAAACTCGAATAG---    738


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00681 and BL01854

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
