Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00672 and BL01851
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:18
# Commandline: needle
# -asequence dna-align/BSNT_00672___yclM.1.5803.seq
# -bsequence dna-align/BL01851___yclM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00672___yclM-BL01851___yclM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00672___yclM-BL01851___yclM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00672___yclM
# 2: BL01851___yclM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1406
# Identity: 1009/1406 (71.8%)
# Similarity: 1009/1406 (71.8%)
# Gaps: 85/1406 ( 6.0%)
# Score: 3536.0
#
#
#=======================================
BSNT_00672___ 1 ATGAAGGTCGTTAAATTCGGAGGCAGCTCACTTGCTTCAGGCGCCCAGCT 50
|||||.|||||||||||.|||||||||||.||.||.|||||.||||||||
BL01851___ycl 1 ATGAAAGTCGTTAAATTTGGAGGCAGCTCGCTCGCATCAGGAGCCCAGCT 50
BSNT_00672___ 51 TGACAAGGTGTTTCACATCGTTACCTCAGATCCGGCACGGAAAGCTGTAG 100
.||.||.||.|||||.|||||.||.||.|||||||.|.|||..||.||.|
BL01851___ycl 51 AGAGAAAGTATTTCAAATCGTCACTTCCGATCCGGAAAGGAGGGCCGTCG 100
BSNT_00672___ 101 TCGTTTCAGCTCCGGGAAAACGCTATGCCGAGGATACGAAAGTGACTGAT 150
||||.||.||.||.||||||||..||.||||||||||||||||.|||||.
BL01851___ycl 101 TCGTATCGGCACCCGGAAAACGGCATCCCGAGGATACGAAAGTAACTGAC 150
BSNT_00672___ 151 CTCTTAATCGCATGTGCAGAACAATA-----TTTGGCAACAGGCAGTGCA 195
||.|||||||.|||.||..||||.|| |.|.|.||.|.|| .|
BL01851___ycl 151 CTGTTAATCGAATGCGCCCAACAGTACCTATTATCGAAAGAAGC----GA 196
BSNT_00672___ 196 CCTGAACTGGCGGAAGCAGTTGTGGAACGGTACGCTCTCATCGCCAATGA 245
|| |..||||..||.||..||||.|.||||||.||....|||||
BL01851___ycl 197 CC-GGCCTGGTTGAGGCGATTGTCGGACGGTATGCCGATATCGC------ 239
BSNT_00672___ 246 GCTTCAGCTGGGGCAAAGCATTATCGA-------AAAAATCAGAAAT--- 285
|||..||||.|||| ||..||| |..||.|.| ||
BL01851___ycl 240 GCTAGAGCTCGGGC------TTGCCGATGACGTGATCAACCGG--ATCCG 281
BSNT_00672___ 286 ----GATCTGTTTACGCTTTTAGAAGGAGATAAAAGCAATCCCGAGCAAT 331
||.|||.||..|||..|.|||||.|||||||..|||||.||.|..|
BL01851___ycl 282 GGCAGACCTGCTTCAGCTGCTCGAAGGTGATAAAACAAATCCGGAACGGT 331
BSNT_00672___ 332 ACCTTGACGCAGTCAAGGCCAGCGGAGAGGATAACAATGCCAAGCTGATC 381
...||||.||..||||.||.|||||.||.||||||||||||||.|||.|.
BL01851___ycl 332 TTATTGATGCGATCAAAGCTAGCGGCGAAGATAACAATGCCAAACTGGTA 381
BSNT_00672___ 382 GCCGCTTACTT------CCGTTATAAAGGCGTCAAAGCGGAATATGTAAA 425
||.||.||||| |||| ||.||..||||..|.|||||.|.
BL01851___ycl 382 GCGGCCTACTTCAGGCACCGT------GGAGTTGAAGCACATTATGTCAG 425
BSNT_00672___ 426 CCCGAAGGATGCCGGCCTCTTTGTGACAAATGAACCCGGCAACGCGCAAG 475
.||.||.||.|||||.||.||.|||||.|..||||||||||||||.||||
BL01851___ycl 426 TCCAAAAGACGCCGGGCTGTTCGTGACGAGCGAACCCGGCAACGCACAAG 475
BSNT_00672___ 476 TTCTTCCTGAATCCTATCAAAACCTCTATCGTCT---TCGGGAACGTGAC 522
|.||.||.||.|||||..|.||.||.|.||..|| .|.|.|| |.
BL01851___ycl 476 TGCTGCCCGAGTCCTACGACAATCTGTTTCAGCTCAGACAGCAA----AA 521
BSNT_00672___ 523 GGAC-TCATCATTTTTCCCGGTTTTTTCGGATTCAGCAAGGATGGCGATG 571
||.| ||||.||.||||||||.||.||||||||||||.||||.||.||.|
BL01851___ycl 522 GGGCATCATTATCTTTCCCGGCTTCTTCGGATTCAGCCAGGAAGGAGAAG 571
BSNT_00672___ 572 TGATCACATTCTCACGGAGCGGTTCTGATATTACCGGTTCGATTCTTGCC 621
||||.||.||.||.||.|||||.|||||.|||||.||.||.|||.|.||.
BL01851___ycl 572 TGATGACGTTTTCGCGCAGCGGCTCTGACATTACGGGCTCCATTTTAGCG 621
BSNT_00672___ 622 AACGGACTACAAGCCGATTTGTACGAAAACTTTACAGACGTGGACGCTGT 671
||.|||.|..|||||||.|||||.||||||||.||.|||||.|||||.||
BL01851___ycl 622 AATGGATTGAAAGCCGAGTTGTATGAAAACTTCACTGACGTTGACGCCGT 671
BSNT_00672___ 672 GTATTCTGTCAATCCGTCCTTCGTTGAGAATCCA-----AAGGAAATCAG 716
.|||||||||||.|||.|..|||| ||||| ||.||||||.|
BL01851___ycl 672 TTATTCTGTCAACCCGGCGATCGT-----ATCCAACCCGAAAGAAATCCG 716
BSNT_00672___ 717 CGAGCTGACATATAGAGAGATGCGGGAGCTGTCCTACGCGGGTTTTTCAG 766
||||||||||||..|.||.|||.|.||||||||.||.||.||.|||||.|
BL01851___ycl 717 CGAGCTGACATACCGGGAAATGAGAGAGCTGTCGTATGCCGGCTTTTCCG 766
BSNT_00672___ 767 TGTTTCATGATGAAGCGCTCATTCCGGCATTCAGAGCGGGGATTCCTGTT 816
|.||||||||||||||..|.||.||.||.|||.|.|||.|.||.||.|||
BL01851___ycl 767 TCTTTCATGATGAAGCATTGATCCCTGCTTTCCGGGCGCGCATACCGGTT 816
BSNT_00672___ 817 CAGATCAAAAATACGAACAACCCCTCAGCCGAAGGCACCCGCGTCGTCAG 866
||||||||||||||.||||||||....||.|||||.||..|.||.|||..
BL01851___ycl 817 CAGATCAAAAATACAAACAACCCGGACGCAGAAGGGACAAGAGTTGTCGC 866
BSNT_00672___ 867 CAAGCGGGATAACACAAACGGGCCTGTCGTCGGCATTGCCAGCGACACCG 916
||..||.||.|||||.|||||.|||||||||||.||.|||.||||||.||
BL01851___ycl 867 CACACGCGACAACACGAACGGACCTGTCGTCGGGATCGCCGGCGACAGCG 916
BSNT_00672___ 917 GTTTTTGCAGCATTTATATCAGCAAGTATCTCATGAACAGAGAAATCGGT 966
|.||||||||||||||.||||||||.|||.|.||||||.||||||||||.
BL01851___ycl 917 GATTTTGCAGCATTTACATCAGCAAATATTTGATGAACCGAGAAATCGGC 966
BSNT_00672___ 967 TTTGGCCGCAGAGCCCTTCACATCCTGGAGGAGCATGGTTTGACGTATGA 1016
||.||||||.|.|.|||.||.|||||.||.||..|.||..||||.|||||
BL01851___ycl 967 TTCGGCCGCCGCGTCCTGCAAATCCTTGAAGATGAAGGGCTGACATATGA 1016
BSNT_00672___ 1017 GCATGTTCCATCGGGAATCGATGACATGACAATCATTTTATGGCAGGGGC 1066
.||..||||.||.||.||.||.||.||.||.|||||||||.|||||...|
BL01851___ycl 1017 ACACATTCCGTCCGGCATTGACGATATTACGATCATTTTAAGGCAGAATC 1066
BSNT_00672___ 1067 AAATGGAT---GCCGCCACTGAACGCAGCGTCATCAAACGGATCGAAGAG 1113
|||||||| ||.||.....||||.| |.||||||||||||.|.||.
BL01851___ycl 1067 AAATGGATCAAGCAGCAGAAAAACGGA---TGATCAAACGGATCAAGGAA 1113
BSNT_00672___ 1114 GATTTGCATGCCGATGAAGTCATCG-TCGAGCATCATCTCGCCCTGATTA 1162
||.|||.||||.|||||||| |.|| |.||.||..||.|.||||||||.|
BL01851___ycl 1114 GAGTTGGATGCTGATGAAGT-AGCGATTGAACACAATATTGCCCTGATCA 1162
BSNT_00672___ 1163 TGGTTGTAGGGGAAGCGATGCGCCACAATGTCGGTACAACGGCAAGAGCC 1212
||||.||.||.|||||.||||||||.||.|||||.||.|||||||||||.
BL01851___ycl 1163 TGGTCGTCGGCGAAGCCATGCGCCATAACGTCGGAACGACGGCAAGAGCG 1212
BSNT_00672___ 1213 GCCAAAGCATTATCAGAGGCACAG-GTGAATATCGAAATGATCAATCAGG 1261
.|.||||||||.||.||.|| |.| ||.||.||||||||||||||.||||
BL01851___ycl 1213 TCAAAAGCATTGTCTGAAGC-CGGCGTCAACATCGAAATGATCAACCAGG 1261
BSNT_00672___ 1262 GATCTTCTGAAGTGAGCATGATGTTTGGCGTAAAAGAAGCCGAAGAAAGA 1311
|.||.||.|||||.|||||||||||.|||||.||.|||||..|.||||.|
BL01851___ycl 1262 GCTCCTCGGAAGTCAGCATGATGTTCGGCGTTAAGGAAGCTCAGGAAAAA 1311
BSNT_00672___ 1312 AAAGCCGTCCAAGCGTTATACCGGGAATTTTTCGCGGGCGTGCTGATCTC 1361
.||||.||||..||.|||||||.|||.||||||||....|| ||||
BL01851___ycl 1312 CAAGCGGTCCGCGCATTATACCAGGAGTTTTTCGCAAAAGT-----TCTC 1356
BSNT_00672___ 1362 --TTAA 1365
||||
BL01851___ycl 1357 GTTTAA 1362
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