Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00664 and BL01848
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_00664___yclH.1.5803.seq
# -bsequence dna-align/BL01848___yclH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00664___yclH-BL01848___yclH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00664___yclH-BL01848___yclH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00664___yclH
# 2: BL01848___yclH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 701
# Identity: 514/701 (73.3%)
# Similarity: 514/701 (73.3%)
# Gaps: 37/701 ( 5.3%)
# Score: 1837.5
#
#
#=======================================
BSNT_00664___ 1 ATGAGC----TTATTAGAATTTCAACAAGTCGGATACTGGTATAAAGACA 46
|||.|| || |||||||||||..|.|||||.||.||||||| |
BL01848___ycl 1 ATGGGCAGTATT-TTAGAATTTCAGAATGTCGGCTATTGGTATA-----A 44
BSNT_00664___ 47 AAAGC-----CAGCCATTGTTTCAGGATATTAACATCAGCTTTCAA---- 87
|||.| |||||..|.||..||||| ||||||.|||||
BL01848___ycl 45 AAATCAGGATCAGCCTCTATTCGAGGAT------ATCAGCATTCAATTCA 88
BSNT_00664___ 88 --AAAGGCAAATTCTACACAATCGTCGGCACATCAGGGACGGGGAAAACC 135
.||||....||.||.||.||.|||||.||.||.||..|.||.||||||
BL01848___ycl 89 GCCAAGGACTCTTATATACGATTGTCGGGACTTCCGGTTCCGGCAAAACC 138
BSNT_00664___ 136 ACTTTCCTGTCTCTGGCAAGCGGACTTGACGCACCAAAAGAAGGAAACAT 185
||.||..|.||..||||..|||||||||||||.||||||||.||.|||||
BL01848___ycl 139 ACCTTTTTATCGTTGGCGGGCGGACTTGACGCGCCAAAAGAGGGGAACAT 188
BSNT_00664___ 186 CCTTTACGACGGA-AAAGCGGTGTCTAAAATCGGCTTAACCAATTTCAGA 234
|||.|||.|.||| |||.| .|.||.||||||||..|.||||..|||.|.
BL01848___ycl 189 CCTCTACAAAGGAGAAAAC-ATTTCAAAAATCGGACTGACCAGCTTCCGC 237
BSNT_00664___ 235 AATCAATATGTATCAATCGTCTTTCAGGCGTACAATCTGCTCCCGTATAT 284
||||||||||||||.|||||.||||||.|.||.||.|||||.||||||||
BL01848___ycl 238 AATCAATATGTATCGATCGTTTTTCAGTCCTATAACCTGCTGCCGTATAT 287
BSNT_00664___ 285 GACGGCTTTGCAGAACGTCACAACCGCTATGGAAATCACGGGTTCTAAAG 334
|||||||.|.||.||..||||..|.||.|||||||||||.||.|||.|.|
BL01848___ycl 288 GACGGCTCTCCAAAATATCACGTCGGCCATGGAAATCACCGGATCTCAGG 337
BSNT_00664___ 335 AAAAGAACAAAGAATCATATGCGCTT--GACATGCTGCAAAAGGTTGGCA 382
..||.|||||.|||..||| ||||| ||.|||||..|||||||.||||
BL01848___ycl 338 TCAAAAACAAGGAACAATA--CGCTTTGGAGATGCTCGAAAAGGTCGGCA 385
BSNT_00664___ 383 TCAACGAAAAACAAGCCCGGCAAAAAGTGCTCACACTGAGCGGCGGACAG 432
||..||||||.||.|||.|.||.|||||..|.|||.|.||||||||.|||
BL01848___ycl 386 TCGGCGAAAAGCAGGCCAGACAGAAAGTATTGACATTAAGCGGCGGCCAG 435
BSNT_00664___ 433 CAGCAGCGGGTATCAATTACAAGGGCTTTCTGCTGTGACACGGATCTTAT 482
||||||||.||.||.||.|..||.||.||||||||||||||||||.|.||
BL01848___ycl 436 CAGCAGCGTGTCTCCATCATCAGAGCGTTCTGCTGTGACACGGATTTAAT 485
BSNT_00664___ 483 CGTAGCCGATGAACCGACCGGAAACCTTGATGAGGACACATCAAAAGAAA 532
|||.||||||||||||||.||.||..|.|||||.||.|||||||||||.|
BL01848___ycl 486 CGTCGCCGATGAACCGACAGGCAATTTGGATGAAGATACATCAAAAGACA 535
BSNT_00664___ 533 TTGTACGCCTCTTTCAAGATCTGGCGCACAAGGAAAATAAATGCGTCATT 582
|.||.||.|||||||||.|.||.||.|||.|.|||||.|||||||||||.
BL01848___ycl 536 TCGTCCGGCTCTTTCAAAACCTTGCCCACCAAGAAAACAAATGCGTCATC 585
BSNT_00664___ 583 ATGGTGACGCACGATGAACAAATTGCAAAAGTGTCAGACATCAATATCAG 632
|||||.||.||.||||||||.||.|||||.||.||.||..||||.||||.
BL01848___ycl 586 ATGGTCACCCATGATGAACAGATCGCAAAGGTATCCGATGTCAACATCAC 635
BSNT_00664___ 633 ACTTTCAAGAGGAAGCTTTACTGTGAAGGAAAACG--TCGCAGTGGTATA 680
.||||||||.||..|||||||.||.|| |||||| |..|||..|.|||
BL01848___ycl 636 GCTTTCAAGGGGCGGCTTTACCGTCAA--AAAACGCATATCAGCAGGATA 683
BSNT_00664___ 681 A 681
|
BL01848___ycl 684 A 684
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