Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00655 and BL01845
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:16
# Commandline: needle
# -asequence dna-align/BSNT_00655___yclF.1.5803.seq
# -bsequence dna-align/BL01845___yclF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00655___yclF-BL01845___yclF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00655___yclF-BL01845___yclF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00655___yclF
# 2: BL01845___yclF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1562
# Identity: 1064/1562 (68.1%)
# Similarity: 1064/1562 (68.1%)
# Gaps: 154/1562 ( 9.9%)
# Score: 3382.5
#
#
#=======================================
BSNT_00655___ 1 ATGGCTTCGA---TTGATAACGAAAGTATCATTAAAAGCGTCCCGCAAAA 47
||| ||.| .|.|.||.||||.| .||.|||.|.|.||||||||
BL01845___ycl 1 ATG---TCAAACCATCAAAAAGAAACT---TTTCAAAACATTCCGCAAAA 44
BSNT_00655___ 48 AGGGTTCTTTGGTCACCCGCGAGGACTATTTACACTATTTTTCACCGAAT 97
.|||||.|||||.||.||.||.|||||.||.||..||||.|||||.||||
BL01845___ycl 45 GGGGTTTTTTGGACATCCCCGCGGACTCTTCACCTTATTCTTCACTGAAT 94
BSNT_00655___ 98 TTTGGGAGCGTTTCTCTTACTATGGAATGAGAGCAAT-CTTACTTTACTA 146
||||||||||.||.||.|||||.||.||||||||.|| |||| |.||.||
BL01845___ycl 95 TTTGGGAGCGCTTTTCATACTACGGCATGAGAGCCATCCTTA-TCTATTA 143
BSNT_00655___ 147 TTTGTATACAGAGACGGTAAACGGAGGGCTCGGCTTTGA-CAAGGGCACT 195
|||||||||||||..|..|||.||.||.|||||.||||| |||..| ||.
BL01845___ycl 144 TTTGTATACAGAGGTGACAAAAGGCGGCCTCGGGTTTGATCAAACG-ACA 192
BSNT_00655___ 196 GCGGTTGCCATTATGTCGATCTACGGATCACTCGTATACATGTCCACTAT 245
|||....|.||||||.|..|.||.||.||.|||||.||.||||||...||
BL01845___ycl 193 GCGAACTCGATTATGGCCGTATATGGTTCCCTCGTCTATATGTCCGGCAT 242
BSNT_00655___ 246 TATTGGCGGATGGCTCGCTGACCGGGTATTCGGTACCGCAAACACCGTGT 295
|||.||.||.|||.|.||.|||.||.|..||||.||.|||||||||||||
BL01845___ycl 243 TATCGGGGGCTGGATAGCGGACAGGCTCCTCGGAACTGCAAACACCGTGT 292
BSNT_00655___ 296 TTTACGGCGGCATATTCATTATGTTCGGCCACATT------GCACTCGCC 339
|||||||||||.|..|||||||||||||.|||||| .||.||
BL01845___ycl 293 TTTACGGCGGCGTGCTCATTATGTTCGGACACATTCTTTTGTCATTC--- 339
BSNT_00655___ 340 TATCCGGGCAGCGCGATCGCATTCTATATCAGCATGGCGCTT-ATTATTG 388
|||||.||||....|||.||||..|||||||| |..||| ||.||..
BL01845___ycl 340 ---CCGGGAAGCGTCCCCGCTTTCTTCATCAGCAT-GTTCTTGATCATCA 385
BSNT_00655___ 389 TCGGAACAGGCTTATTAAAACCAAACGTTTCAAGCGTGGTTGGGGATCTT 438
|.||.||||||.|.||||||||.|||||.||||||||.||.||.|||.|.
BL01845___ycl 386 TTGGGACAGGCCTTTTAAAACCTAACGTATCAAGCGTTGTCGGCGATTTG 435
BSNT_00655___ 439 TACACGAAAGAAGACCCGCGCCGCGACTCAGGTTTCAGTATTTTCTACAT 488
||||.....||||||.|.||||||||.||.||||||||.||.|||||.||
BL01845___ycl 436 TACAGCCCTGAAGACACCCGCCGCGATTCTGGTTTCAGCATCTTCTATAT 485
BSNT_00655___ 489 GGGGATTAACCTCGGTGGTTTACTTGCGCCGTTAATTATCGGAACACTCG 538
|||.||.|||||.||.||.||.||.||||||.|.||..||||.|||.|||
BL01845___ycl 486 GGGAATCAACCTTGGCGGATTTCTCGCGCCGATTATCGTCGGCACAGTCG 535
BSNT_00655___ 539 GACAGAAGTACAACTATCATCTCGGCTTCGGAGC--TGCCGCGGTCGGAA 586
|.||||..||||||||.|||||||||||| ||| |||.||..||||.|
BL01845___ycl 536 GTCAGACATACAACTACCATCTCGGCTTC--AGCCTTGCTGCCATCGGCA 583
BSNT_00655___ 587 TGCTTCTCGGACT--TATCGTATTT-GCTTTGACAAGAAAGAAAAACCTC 633
||.|..||||||| |..|.||||| || |||..|.||||||||||||
BL01845___ycl 584 TGTTGTTCGGACTGCTGACCTATTTAGC---GACGCGGAAGAAAAACCTC 630
BSNT_00655___ 634 GGGCTTGCAGGTTCCAA----TGTGCCGAATCCGCT-------GTCTAAA 672
||...|||.|| || .||.||||||||||| | ||.||
BL01845___ycl 631 GGATCTGCCGG----AAGAACGGTACCGAATCCGCTCACACCAG-CTGAA 675
BSNT_00655___ 673 A--AATCTGCGATTGGCAC----CGGAATCGGTGTTATCATTGTGGCGAT 716
| ||..||...||.|.|| |||.||||||| ||.|||.|||
BL01845___ycl 676 AGGAAAATGGTGTTCGGACGGATCGGGATCGGTG------TTTTGGTGAT 719
BSNT_00655___ 717 CGCAGTGATG--ATCTCTG-----TACA----AACAGGCGTGCTGACGAT 755
||| || ||||.|| |.|| .|..|||..|.||||.||
BL01845___ycl 720 CGC-----TGCCATCTTTGGCTATTCCATCTTTATGGGCTGGATGACAAT 764
BSNT_00655___ 756 CAATCGTTTTATCGA-CCTTGTAAGTATTCTCGGTATTTTGATTCCTGTC 804
|||.|..|||| ||| ..|.||.||...||||||.||||||||.||..|.
BL01845___ycl 765 CAAGCTGTTTA-CGATGATCGTCAGCTGTCTCGGCATTTTGATCCCGCTG 813
BSNT_00655___ 805 ATTTATTTCATCATCATGTTTACAAGCAAAAAAGCGGACAAAACA-GAAA 853
||||||||||||.|||||||||.|||| ...|||..|||.|...| |||.
BL01845___ycl 814 ATTTATTTCATCGTCATGTTTAAAAGC-TCCAAGACGACGAGTGATGAAC 862
BSNT_00655___ 854 AATCCCGTCTTGCCGCTTACGTTCCTTTGTTTAT--CAGTGCTGTCATGT 901
..||||||||..|.||||||.||||..|||||.| ||..|.|| ||||
BL01845___ycl 863 GTTCCCGTCTCACAGCTTACATTCCGCTGTTTGTCGCATCGATG--ATGT 910
BSNT_00655___ 902 TCTGGGCCATTCAGGAACAGGGAGCGACCATTCTTGCGGTATACGCTGAT 951
|.|||||.|||||||||||.||.||.|..|||.|.||....||.||.|||
BL01845___ycl 911 TTTGGGCGATTCAGGAACAAGGCGCCAATATTTTAGCCACCTATGCAGAT 960
BSNT_00655___ 952 GAACGCATAAAACTTTCATTGGG-------CGGATTCGAACTTCAGTCAT 994
.|||||| .|||||.|| .||..||.||.|.||.||.|
BL01845___ycl 961 AAACGCA-------CTCATTTGGAATTTTTAGGTGTCCAATTGCACTCTT 1003
BSNT_00655___ 995 CTTGGTTCCAATCATTAAATCCATTGTTTGTCGTCATTTTTGCGCCAATA 1044
||||||||||.||..|.|||||.|||||..||||..|..||||.||..|.
BL01845___ycl 1004 CTTGGTTCCAGTCGCTGAATCCGTTGTTCATCGTTGTGCTTGCACCGGTT 1053
BSNT_00655___ 1045 TTCGCATGGCTCTGGATGAAGCTTGGCAAACGCCAGCCGTCTACACCAGT 1094
|||||||||.|.|||||||.|||.||.||.||.||||||||.||.||...
BL01845___ycl 1054 TTCGCATGGATTTGGATGAGGCTCGGAAACCGTCAGCCGTCAACGCCGAC 1103
BSNT_00655___ 1095 TAAATTCTCAATCGGAATTATTTTAGCCGGATTGTCATTTATCATTATGG 1144
.||.||.|||.||||..|.||||||||||||.||||||||.||.|.|||.
BL01845___ycl 1104 GAAGTTTTCACTCGGGTTGATTTTAGCCGGACTGTCATTTGTCGTCATGA 1153
BSNT_00655___ 1145 TATTCCCTGCT---ATGCAA-GGAAAAGAAGCACTCGTAAGCCCGCTTTG 1190
|.||||||||| || ||| ||.|..|||.|.||.|..|..||..|.||
BL01845___ycl 1154 TTTTCCCTGCTTACAT-CAACGGCACTGAATCGCTTGCCAATCCAATGTG 1202
BSNT_00655___ 1191 GCTTGTTCTCAGCTTCCTGCTTGTCGTGCTTGGAGAGCTGTGCCTGTCTC 1240
||||||.||||||||||||.|.|||||.||.||.||..|||||.||||||
BL01845___ycl 1203 GCTTGTGCTCAGCTTCCTGATCGTCGTTCTCGGGGAATTGTGCTTGTCTC 1252
BSNT_00655___ 1241 CAGTCGGTTTATCCGTGACAACG---AAACTGGCACCAGCTGCCTTCTCT 1287
|||||||.||||||| ||||| ||.|||||.||.|||||.|||||.
BL01845___ycl 1253 CAGTCGGGTTATCCG---CAACGTCAAAGCTGGCTCCTGCTGCTTTCTCA 1299
BSNT_00655___ 1288 GCACAGACAATGAGTATGTGGTTTCTGACGAACGCAGCAGCCCAAGCGAT 1337
||.|||||.||||||.|.|||||.|||.|.|||||..|.||.||.||.||
BL01845___ycl 1300 GCGCAGACGATGAGTCTATGGTTCCTGTCAAACGCTTCTGCACAGGCCAT 1349
BSNT_00655___ 1338 CAATGCCCAAGTAGCCGGATTGT------TTGATAAAATTCCTGAAA--- 1378
|||.||.||..|.|.|.||||.| |||||| |.||.|
BL01845___ycl 1350 CAACGCACAGATCGTCAGATTTTACAGCGTTGATA------CCGAGATCG 1393
BSNT_00655___ 1379 -CAATGTACTTCGGCACCATCGG-TTTGATTTCTATCGTTCTTGGCGGCA 1426
| ||||||||||.|||||| ..|| |.||.|||.|.||.||...||
BL01845___ycl 1394 CC----TACTTCGGCATCATCGGCGGTG-TATCCATCCTGCTCGGGATCA 1438
BSNT_00655___ 1427 TTCTCCTGCTGCTCTCGCCGATGA-TCAAACGCGCG------ATGAAAGG 1469
||.|..|||||||.||.||||..| ||| | ||||| |
BL01845___ycl 1439 TTTTGATGCTGCTGTCACCGAAAATTCA-------GAAATTTATGAA--G 1479
BSNT_00655___ 1470 GGTCTTA--TAA 1479
|||.||| |||
BL01845___ycl 1480 GGTGTTAATTAA 1491
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