Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03231 and BL01844

See Amino acid alignment / Visit BSNT_03231 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:53
# Commandline: needle
#    -asequence dna-align/BSNT_03231___phy.1.5803.seq
#    -bsequence dna-align/BL01844___phyL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03231___phy-BL01844___phyL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03231___phy-BL01844___phyL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03231___phy
# 2: BL01844___phyL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1201
# Identity:     827/1201 (68.9%)
# Similarity:   827/1201 (68.9%)
# Gaps:         107/1201 ( 8.9%)
# Score: 2628.0
# 
#
#=======================================

BSNT_03231___      1 ATGAAGGTTTCAAAAACAATGCT--GCTAAGCA----CTGCCGCGGGTTT     44
                     |||||..|||..|||||   |||  .||.|.||    .|||.||....||
BL01844___phy      1 ATGAACTTTTACAAAAC---GCTCGCCTTATCAACTCTTGCGGCATCCTT     47

BSNT_03231___     45 ATTG-CTTAGCCTGA--CAGCA---ACCTCGGTGTCG--GC-TCA--TTA     83
                     |||| ||  .|||.|  .||||   .||.|.|||.||  || |||  || 
BL01844___phy     48 ATTGTCT--CCCTCATGGAGCATTCTCCCCCGTGCCGAAGCTTCAGCTT-     94

BSNT_03231___     84 TGTGAATGAGGAACATCATTTCAAAGTGACTGCACACACGGAGACAGATC    133
                          ||.|||      |.|||...||||||||..|..|.||||||||.|
BL01844___phy     95 -----ATAAGG------ACTTCTCGGTGACTGCCGATGCAGAGACAGAGC    133

BSNT_03231___    134 CGGTCGCAT----CTGGCGATGACGCAGCAGATGACCCGGCCATTTGGGT    179
                     |||| |.||    ||   ||.|||||.||||||||||||||.||||||||
BL01844___phy    134 CGGT-GGATACCCCT---GACGACGCGGCAGATGACCCGGCGATTTGGGT    179

BSNT_03231___    180 TCATGAAAAACACCCGGAAAAAAGCAAGTTGATTACAACAAATAAGAAGT    229
                     ||||...||.||.||.|||||||||..|.||||.|||||||||||.||.|
BL01844___phy    180 TCATCCGAAGCAGCCTGAAAAAAGCCGGCTGATCACAACAAATAAAAAAT    229

BSNT_03231___    230 CAGGGCTCG-TCGTGTATGATTTAGACGGAAAACAGCT-TCATTCTTATG    277
                     | .||||.| ||||.||.||||||.||||||||||||| .|| .|.|||.
BL01844___phy    230 C-TGGCTTGATCGTTTACGATTTAAACGGAAAACAGCTGGCA-GCCTATC    277

BSNT_03231___    278 AGTTTGGCAAGCTCAATAATGTCGATCTGCGCTATGATTTTCCATTGAAC    327
                     .|||||||||..|.||.||.||||||||.|||||..|||||||..|..|.
BL01844___phy    278 CGTTTGGCAAATTAAACAACGTCGATCTCCGCTACAATTTTCCGCTCGAT    327

BSNT_03231___    328 GGCGAAAAAATTGATATTGCTGCCGCATCCAATCGGTCCGAAGGAAAAAA    377
                     |||.||||||||||||||||.|..||.||.||.|||||.||.||.|||||
BL01844___phy    328 GGCAAAAAAATTGATATTGCCGGGGCCTCAAACCGGTCAGACGGCAAAAA    377

BSNT_03231___    378 TACAATTGAAGTATATGCAATAGACGGGGATAAAGGAAAATTGAAAAGCA    427
                     .||..|||||.||||.||..|.|||||.||.|||...||..||||||.||
BL01844___phy    378 CACGGTTGAAATATACGCCTTTGACGGCGAAAAAAACAAGCTGAAAAACA    427

BSNT_03231___    428 TTACTGATCCGAAACATCCTATTTCCACCAATATTTCTGAGGTTTATGGA    477
                     |.....||||..||.|.||||||...|||.|||||...|||||.|||||.
BL01844___phy    428 TCGTCAATCCTCAAAAACCTATTCAAACCGATATTGAGGAGGTGTATGGT    477

BSNT_03231___    478 TTCAGCTTGTATCACAGCCAGAAAACAGGAGCA--TTTTACGCATTAGTG    525
                     ||||||.|||||||||||||||||||.|  |||  ||.|||||..|.|||
BL01844___phy    478 TTCAGCCTGTATCACAGCCAGAAAACCG--GCAAGTTCTACGCCATGGTG    525

BSNT_03231___    526 ACAGGCAAACAA-GGGGAATTTGAGCAGTATGAAATTGTTGATGGTGGAA    574
                     ||.|| |||.|| ||.|||||.|||||.||.|||.|..||||....||||
BL01844___phy    526 ACCGG-AAAGAACGGAGAATTCGAGCAATACGAACTGTTTGACAACGGAA    574

BSNT_03231___    575 AGGGTTATGTAACAGGGAAAAAAGTGCGTGAATTTAAGTTGAATTCTCAG    624
                     |.||..|.||...|||.|||||.||.||...|||.||..|||..|||||.
BL01844___phy    575 AAGGACAAGTCGAAGGCAAAAAGGTCCGCTCATTCAAAATGAGCTCTCAA    624

BSNT_03231___    625 ACCGAAGGCCTTGTTGCGGATGATGAGTACGGAAACCTATACATAGCAGA    674
                     ||.|||||.||||..||.||||||||.|||||.||..|.|||||.||.||
BL01844___phy    625 ACAGAAGGGCTTGCAGCAGATGATGAATACGGCAAAATGTACATCGCTGA    674

BSNT_03231___    675 GGAAGATGAGGCCATCTGGAAATTTAACGCTGAGCC---CGGCGGAGGAT    721
                     .|||||.|..||.||.|||...||.|.|||.|||||   ||||||| |||
BL01844___phy    675 AGAAGACGCTGCGATTTGGTCTTTCAGCGCCGAGCCAAACGGCGGA-GAT    723

BSNT_03231___    722 CAAAGGGGCAGGTTGTTGACCGTGC-----GACAGGAGATCATTTGACAG    766
                       ||.||..|..||||.||.||.||     |||.|     |||||.||.|
BL01844___phy    724 --AAAGGAAAAATTGTCGATCGCGCAGGCGGACCG-----CATTTAACCG    766

BSNT_03231___    767 CTGATATTGAAGGACTGACAATCTATTATGCACCAAATGGCAAAGGATAT    816
                     |||||||||||||.|||||.||.||.||.|.|..|.|.|||.||||||||
BL01844___phy    767 CTGATATTGAAGGGCTGACGATTTACTACGGAGAAGACGGCGAAGGATAT    816

BSNT_03231___    817 CTCATGGCTTCAAGTCAAGGAAATAACAGCTATGCAATGTATGAACGGCA    866
                     .|.||.||.||.|||||.||..|||||.|.|||||.||.|||||.|||| 
BL01844___phy    817 TTGATCGCGTCCAGTCAGGGCGATAACCGTTATGCCATCTATGACCGGC-    865

BSNT_03231___    867 GGGGGAAAATCG-CTATGTAGCCAACTTTGAGATTACAGATGGCG----A    911
                     |.|||||||.|| ||||||.|||.|.|||...|||   ||||.||    |
BL01844___phy    866 GCGGGAAAAACGACTATGTCGCCGATTTTTCAATT---GATGACGGTAAA    912

BSNT_03231___    912 GAAGATAGACGGTACTAGTGACACGGATGGTATTGATGTTCTCGGTTTCG    961
                     ||| ||.|||||.||.||.||.||.|||||.||.||.||..||||.||||
BL01844___phy    913 GAA-ATCGACGGGACAAGCGATACCGATGGAATCGACGTCATCGGCTTCG    961

BSNT_03231___    962 GACTTGGCCCAAAATATCCGTACGGGATTTTTGTGGCGCAGGATGGCGAA   1011
                     |.||.|||..|||||||||.|||||.||.|||||.||.||.||.||||||
BL01844___phy    962 GCCTCGGCAAAAAATATCCATACGGCATCTTTGTCGCCCAAGACGGCGAA   1011

BSNT_03231___   1012 AATATCGATAACGGACAAGCC-GTCAATCAAAATTTCAAAATTGTATCGT   1060
                     ||||..||.||.|||| |||| |.||||||.||.|||||||||||.||.|
BL01844___phy   1012 AATACGGAAAATGGAC-AGCCAGCCAATCAGAACTTCAAAATTGTCTCCT   1060

BSNT_03231___   1061 GGGAACAAATTGC--ACAGCATCTCGGCGAAATGCCTGATCTTCATAAAC   1108
                     |||||.|||||||  || || .||.|.|||.|.|||||||.|..||.|.|
BL01844___phy   1061 GGGAAAAAATTGCTGAC-GC-GCTGGACGACAAGCCTGATATCGATGATC   1108

BSNT_03231___   1109 AGGTGAA--CCCGAGGAAGCTGAAAGACCGTTCTGACGGCTAG-------   1149
                     ||||.||  |||||  ||.||||||.|.||           ||       
BL01844___phy   1109 AGGTCAATCCCCGA--AAACTGAAAAAACG-----------AGCCAAATA   1145

BSNT_03231___   1149 -   1149
                      
BL01844___phy   1146 A   1146


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