Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06033 and BL01841
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:03
# Commandline: needle
# -asequence dna-align/BSNT_06033___yxiB.1.5803.seq
# -bsequence dna-align/BL01841.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06033___yxiB-BL01841.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06033___yxiB-BL01841.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06033___yxiB
# 2: BL01841
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 453
# Identity: 214/453 (47.2%)
# Similarity: 214/453 (47.2%)
# Gaps: 168/453 (37.1%)
# Score: 414.0
#
#
#=======================================
BSNT_06033___ 1 ATGTT-------------GTTACATTCGGTAAAAGCCG--------ACTT 29
|||.| |||..||.||| ||.| ||||
BL01841 1 ATGATCTGGGAAAAAACAGTTTTATACGG-----GCTGCAAGGTACACTT 45
BSNT_06033___ 30 -ACATGAAAAGCAGGAACAGATCCATCAA-TTAAAACGAGTGCTGCACGA 77
.|||.|||| |..|||||.||.|.||| |.|||| |.|||...||..
BL01841 46 CTCATCAAAA--AACAACAGCTCGAACAACTGAAAA--ATTGCCAAACTG 91
BSNT_06033___ 78 AATCAG--GCAAATCAAACACGAATTCTCTGAGG--------CCCAGCAT 117
|||.|| |||.|| |||.|.||||| |||.| ..|||.||
BL01841 92 AATTAGAAGCAGAT-AAAAAGGAATT---TGACGATTCAAAAGACAGTAT 137
BSNT_06033___ 118 C-----------TCATTCACCGGCCACATCTTAACCGGGAGGCATGGAGA 156
| .|..||.|||.|.|||| ||||.||
BL01841 138 CAAAAAGCCCGAACTGTCGCCGACGACAT-----------GGCAGGG--- 173
BSNT_06033___ 157 GGAACACATGCTCAGC--GG--------TTTGAAGATATTCGT--GAAG- 193
|||| || |||.||.| ||| ||||
BL01841 174 ------------CAGCCTGGCTGATTCTTTTAAAAA----CGTCAGAAGC 207
BSNT_06033___ 194 GA-ATGAACAAAGCATATCAGCAAATCA---------AAAGCGATCAAGT 233
|| |||||.|..|||||| |||.| ||||
BL01841 208 GACATGAAAACGGCATAT-----AATGATATTTGCGGAAAG--------- 243
BSNT_06033___ 234 CAGCGGAATCA----TCGAAAGCATAGAAGGA-AAAATCCACTCATTAGA 278
||||..|||.| |..|||..||..||||| ||||||...||.|||.|
BL01841 244 CAGCTAAATGAAGTGTTTAAACAATTAAAGGAGAAAATCTCTTCTTTAAA 293
BSNT_06033___ 279 GGGCGATGTCTATTCCATAAGACGCCAAATTACGAGGAT---AGAGCAT- 324
.|..|||.|..||||..||.| || ||||| ||..|||
BL01841 294 TGATGATATTGATTCGCTAGG---------TA--AGGATATCAGCTCATT 332
BSNT_06033___ 325 -------GAAATAGAGAA---GGAAAAACATAAAAAGTGA---------- 354
.||||.||.|| |||||||.| |.||||.||
BL01841 333 AAAAACGAAAATCGAAAAACTGGAAAAAGA-AGAAAGAGAAGCCCGCCGC 381
BSNT_06033___ 354 --- 354
BL01841 382 TAA 384
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