Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06031 and BL01838
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:03
# Commandline: needle
# -asequence dna-align/BSNT_06031.1.5803.seq
# -bsequence dna-align/BL01838.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06031-BL01838.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06031-BL01838.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06031
# 2: BL01838
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2006
# Identity: 953/2006 (47.5%)
# Similarity: 953/2006 (47.5%)
# Gaps: 772/2006 (38.5%)
# Score: 1870.0
#
#
#=======================================
BSNT_06031 1 TTGAAAACATTAGATGTCCACGCTCTTCACGAGGGCATTCAGCATACGAT 50
||||||||..|||||||.||.|||.|||| |..|.||.||
BL01838 1 TTGAAAACTCTAGATGTTCAGGCTTTTCA-------AACCGGCCTA---- 39
BSNT_06031 51 TGAGAAA---CTGGAC--AAGCAAAAACAACAG-CTG--GAG-------A 85
||.||| || ||| ||..||||| |.||| ||| ||| |
BL01838 40 -GACAAAACGCT-GACCGAATTAAAAA-ACCAGACTGACGAGATTTCAAA 86
BSNT_06031 86 AG-CTGGAAAAAAGCGTTGAGCATCTGGCAGGCATGA---------AGGA 125
|| | |||.|| |||||| ..||||.|.| |.||
BL01838 87 AGTC---AAACAA------AGCATC--AAAGGCCTCACCTCCCTTGACGA 125
BSNT_06031 126 TGCGCTGAAAGGAAAAGGCGGAGATGCCATCCGGACCTTTTACGAGGAGT 175
.||..|.|||||....|||||.||.||.|||||..|.||.|||||.||.|
BL01838 126 CGCCTTAAAAGGCGCGGGCGGTGAAGCGATCCGCTCGTTCTACGAAGAAT 175
BSNT_06031 176 GCCACAAGCCTTTTCTCCTTTTCTTTGGCATG-----TTTATCGACGAAT 220
||||||...|||||||.|||||.| ||| |||||...||
BL01838 176 GCCACACCACTTTTCTTCTTTTTT-----ATGAATCTTTTATTTCCG--- 217
BSNT_06031 221 ACAAAAAAGTACT----GAAACAAAC--ACAGCATGCG----ATTTCCTC 260
||.|.||||.||| |||| |.|| |.|| |||| |||.|||
BL01838 218 ACTATAAAGGACTTTTAGAAA-AGACGAAAAG--TGCGCTTCATTCCCT- 263
BSNT_06031 261 TGTA--GAATCTGACTCCCATGGCATGATTGCAGA-GGCTTT-TCTCTCA 306
||.| ||| ||| |.| |||||| ||||.||
BL01838 264 TGAACCGAA--------CCA------------AAACGGCTTTATCTCGCA 293
BSNT_06031 307 CACGATGC------GAGA--------CATG--GG-----GTCAAGCATGC 335
|.|| |||| |||| || |||||||
BL01838 294 ----AAGCTTTCTTGAGAACGAACTCCATGACGGCGTCAGTCAAGC---- 335
BSNT_06031 336 ACGAGAAG-TGACAGAGCAGCTCACTGACGCAGTGAATCG----CCAGAC 380
|||...| ||||.| |||| |.|||| ||.||..| ||||||
BL01838 336 -CGAATCGCTGACTG-GCAG---ATTGAC---GTCAAAAGCCAACCAGAC 377
BSNT_06031 381 -ATCAGCCA---TCGGCCACATCGTCAGCTTGC---------------CG 411
|| .|||| ||.|||||||||||..|.||| |.
BL01838 378 GAT-GGCCACTGTCAGCCACATCGTCGACCTGCCCGACCTAGACGATTCA 426
BSNT_06031 412 GCAGTCAATGATACCTTTTTCCGAATGGAAA--CAGAACAGGCTGAGCGA 459
||.|||||.|| ||| ||.||.|.||..|..||
BL01838 427 GCCGTCAACGA-----------------AAACGCAAAAAAAGCGCAAAGA 459
BSNT_06031 460 CTGATTACAGACACCCTGCATAAGCTCTTTCA---ATTTGACGGCCAGCA 506
|..||.|..||.||.||..|.|||||| || .||.|||.||.|.||
BL01838 460 CAAATCAGCGAGACGCTCGAAAAGCTC---CACACCTTCGACCGCGAACA 506
BSNT_06031 507 AACCCAAGCACTAGAA----GCAAAATCAGATTTTCAAACGATGAAAAAA 552
.||..|.||.|| ||| ||.|.|..|||..|..|.||||||||..||
BL01838 507 GACAAATGCGCT-GAAAGCGGCGAGAGAAGACCTCGATACGATGAAGCAA 555
BSNT_06031 553 TACATTGATCAGCTCGAAACCATGTACACTGGGCCGAAAATTGAAATCAC 602
|||||..|.|||||.||.|..|||||.||.||||||||.||||||||..|
BL01838 556 TACATCCAGCAGCTGGAGAAAATGTATACGGGGCCGAAGATTGAAATATC 605
BSNT_06031 603 AGGCTACAAAAGCGGCTCCATCCTGAAATCACAGGAACAAGA---AAACA 649
.|..||.||||||||.||.||..|.|| ||.|.||.|.|| ||..|
BL01838 606 GGAATATAAAAGCGGTTCAATTTTAAA---ACCGCAAAATGACTCAACAA 652
BSNT_06031 650 TCAACCAAACCTTCGGCG----------CGATTAACCCGCAAATGAAGCA 689
|||..|||.|...||||| || |||.||||| |
BL01838 653 TCAGTCAAGCTCCCGGCGGCCTGCAAAACG----ACCTGCAAA------A 692
BSNT_06031 690 GCCGGATGATTCACCGATGGAGATGATGCT----------GAAGAAAATA 729
.||.|..||..||||||||||.|.|||||| |||||||| |
BL01838 693 CCCCGGCGAAACACCGATGGAAAAGATGCTTGGGCGATTAGAAGAAAA-A 741
BSNT_06031 730 G----AGAAAC-ATAAGCAGTCCAACGTTGATA-TCGTGATGAAGGATGG 773
| |||||| .|||..|.||| ||||| .|..|||.|||
BL01838 742 GCGGCAGAAACGTTAACGAATCC-----TGATACACAGGATAAAG----- 781
BSNT_06031 774 CAAACAACAGAAGATCGAGCGTGAGATTCATGCTGATGACAGTAA---CG 820
|||.|||| ||.||.|..|..||.||||.| |||.| ||
BL01838 782 -AAAAAACA-AATATAGCACACGAAATTCTT---------AGTTACTTCG 820
BSNT_06031 821 TAACTGTATTACAGAAAGAAGCAGCAGCTCACCCGAAAGTCTATGGAGAC 870
.||| ||| |.| ||||.||..|| |.|||
BL01838 821 AAAC---ATT-CGG--AGAACCATTAG---------ATGTC--------- 846
BSNT_06031 871 ATACGGGTGATAAATGATAAACTATATAATAATAAAAGATTAAAAAAGAT 920
||||||| ||.|..|||
BL01838 847 -----GGTGATA------AAGCCTTAT----------------------- 862
BSNT_06031 921 AGATACGATAGAAGTGATTGACG-AACTAACTCGCAATACTGCAAGCATC 969
||.|.|| |.||| |.|.|| ||||| .||||||
BL01838 863 ---TAGGGTA--------TCACGCAGCCAA--CGCAA------CAGCATC 893
BSNT_06031 970 GACTATGTCGGCG-----GCAAATATTATGTTTATGAAAACGGCCAGATC 1014
.| || ||| ||.||.|||| ||||
BL01838 894 AA-----TC-GCGTGGACGCGAAAATTA--------AAAA---------- 919
BSNT_06031 1015 GTAAGAGAATTCTATGCT---GGAGGGAAAAAGCGGCTAGAAGAAGTGTC 1061
|.|||..| ||||| ||||.| ||.||||||.|
BL01838 920 ----------TTTATTATCAAGGAGG--AAAACC-----GACGAAGTGGC 952
BSNT_06031 1062 ------TTACATACCAGAGG---ATAAAGT--AGGCGGAGCT-AAGTCAC 1099
||| .||.|| |||||.| ||| | |.|||||
BL01838 953 AGCGATTTA-----AAGGGGAATATAAATTTCAGG------TCATGTCAC 991
BSNT_06031 1100 --------TGGATT--------------CATTT------TTGGCTGGAAC 1121
||||.| ||.|| || ||..||||
BL01838 992 ATCGTTCTTGGACTTCTCAAGGAGATCACAGTTCGAAAGTT-GCGAGAAC 1040
BSNT_06031 1122 GCAGTATGAATTTAT-TGAGTGG-------GTAAGCCCTCAGGGTGCTGT 1163
||.||..||..|.| |||.|.| |.||.||.|.| .|
BL01838 1041 -CATTAAAAACATCTCTGACTCGAATCCAAGCAACCCATTA-------CT 1082
BSNT_06031 1164 TAAAAAATTGGCG---------GTCCGAGGCGGGAAGCGTGTT------G 1198
||||||| ||| ||| ||.|.|| |
BL01838 1083 TAAAAAA---GCGCAAAAATTTGTC-----------GCTTCTTATGATAG 1118
BSNT_06031 1199 TCACA-----GATGTTGCTAAACATGTAGTGG---------AGAAGGA-- 1232
|| || |||||| ||||||||..|||| |.||..|
BL01838 1119 TC-CATCCATGATGTT--TAAACATGCTGTGGGGTTCCCTAAAAATCAAC 1165
BSNT_06031 1233 -------TATAAAGGG---AGA----CGTAAAAAAGAAACCTT-----CT 1263
||||.|.|| ||| ||.||.|.||...||.| |.
BL01838 1166 ATAGTTTTATAGATGGGAAAGAATTTCGCAAGAGAGCTGCCCTGAGGACA 1215
BSNT_06031 1264 AAAGGCAGT---GTTAATAGTAAGTGGTG---GCATCCTGGATATGTAGA 1307
||||...|| |||.||| ||| |||.| .||.||
BL01838 1216 AAAGCGGGTGCGGTTGATA-TAA-TGGAGTCCACAGCC------------ 1251
BSNT_06031 1308 TAATTTAAGCTCTTCCCAAACGG--TTA------TAGGAATAAAGA--AT 1347
||| .||||.|| ||| ||| ||||| |.
BL01838 1252 ------AAG------GCAAAAGGGTTTACTGCATTAG----AAAGAGGAG 1285
BSNT_06031 1348 TCCCCTAAAGGTTTATCAACTCTTGGTAGCTCA---AC-----------A 1383
|||| ||| |.||||||.|.|| || |
BL01838 1286 TCCC---------TAT----TGTTGGTACCGCAGTTACTTTCGCTTCTAA 1322
BSNT_06031 1384 CGT--CAGAATGCACTAGATGCAG-GAAAAGGCTGGGTTGGTCAAGGAGC 1430
|.| ||||||..|| .|||.|.| ||| || |
BL01838 1323 CCTTACAGAATATAC-CGATCCCGAGAA----CT---------------C 1352
BSNT_06031 1431 GGAAAAAATGTAT----GATAAAGCAGGAAATTTTTTAG--------GGT 1468
|||.|||| ||.| ||.|||.|||||..|||...|| |||
BL01838 1353 GGACAAAA-GTTTTGCAGAAAAAACAGGACGTTTCGCAGCAGGTGTTGGT 1401
BSNT_06031 1469 AC-------------------AAAAGTGTAGATAAAATGAGAGCTTTCAG 1499
|| |.|.|||| |.||||..||||
BL01838 1402 ACAGACATTTTTGCTGTTTCTACAGGTGT---TGAAATTGGAGC------ 1442
BSNT_06031 1500 ATTGCAATATAAACCAAAGGAAAAAA-------------TGTGG------ 1530
|||.|.||| || |||||
BL01838 1443 -----------AACAATAGG----AAGCGTCGGCGGTCCTGTGGGAGTGA 1477
BSNT_06031 1531 --------AGAGCGA-----------------------------ACTTCA 1543
.|||||| .|||||
BL01838 1478 TTGTTGGTGGAGCGATAGGCGGAGTAGCTGGAGCAATTGCTAGCTCTTCA 1527
BSNT_06031 1544 ----CTGAAAATGAAATTA------CT---------GTTGTAGGATC--- 1571
.|| |||.||||| || ||||..||.||
BL01838 1528 TACGGTG---ATGCAATTAAGGATGCTGGTGAAAAAGTTGCTGGTTCTAT 1574
BSNT_06031 1572 --AAAAACGGAATTAAGAAATGTACATGT-------TGATATTTTAGATT 1612
||||| ||||||||.||..|| |.| |||.|..||.|.||
BL01838 1575 TGAAAAA-GGAATTAAAAACAGT---TTTGAGTCTGTGAAAAGTTGGTTT 1620
BSNT_06031 1613 AA---- 1614
||
BL01838 1621 AAATAG 1626
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