Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00631 and BL01824

See Amino acid alignment / Visit BSNT_00631 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:15
# Commandline: needle
#    -asequence dna-align/BSNT_00631___ycxC.1.5803.seq
#    -bsequence dna-align/BL01824___ycxC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00631___ycxC-BL01824___ycxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00631___ycxC-BL01824___ycxC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00631___ycxC
# 2: BL01824___ycxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1068
# Identity:     599/1068 (56.1%)
# Similarity:   599/1068 (56.1%)
# Gaps:         285/1068 (26.7%)
# Score: 1548.5
# 
#
#=======================================

BSNT_00631___      1 ATGGTTAAACATCAGCAAGCCCCCGCTTATATAGCGGCTA--TTT--TAT     46
                         ||.||||     ||   .|.||||||   ||||| |  |||  |.|
BL01824___ycx      1 ----TTGAACA-----AA---TCTGCTTAT---GCGGC-AGCTTTGCTCT     34

BSNT_00631___     47 ATTCGTTCATTATCGGTTTATCCTTTCTATTCGTAAAA----ATCGCACT     92
                     ||.|.||.||.||.||.||.||||||.|.||.||.|||    .||.||||
BL01824___ycx     35 ATGCTTTTATCATTGGATTTTCCTTTTTCTTTGTCAAATTGGCTCTCACT     84

BSNT_00631___     93 GCAAACAGCAGAG-CCGTTTGATATTTTGGCGCATCGGTTCACCATTGCG    141
                     |    |||| ||| |||.|.||.|||.||||.|||||.||.||..|.||.
BL01824___ycx     85 G----CAGC-GAGTCCGGTCGACATTCTGGCCCATCGCTTTACGGTCGCT    129

BSNT_00631___    142 TTT---GCTGCGGCGACTGTACCGATCTTAT-----------TCGGCTGG    177
                     |||   ||||||              |||||           ||||.|||
BL01824___ycx    130 TTTTTGGCTGCG--------------CTTATTCCCCTTCTGCTCGGATGG    165

BSNT_00631___    178 GTAAAGCTATCAATCCGCGTAAAGGACGTCATTGCCATTTTGCCGCTCGC    227
                     ||.|||.|..|.|||.||.||||.|||| ||.||  |...|||.||    
BL01824___ycx    166 GTGAAGATCGCCATCAGCATAAAAGACG-CACTG--AAAGTGCTGC----    208

BSNT_00631___    228 CCTGCTGTATCCCGCGTTATTTT------TCA--------GC-TTTCAGG    262
                         ||.||    ||.|||||||      |||        || |||||.|
BL01824___ycx    209 ----CTTTA----GCATTATTTTACCCTGTCATGTTTTTTGCTTTTCAAG    250

BSNT_00631___    263 CATTCGGCCTTGTGTACTCGTCCTCCTCTGAAGCGGGAATTATTCAGGCA    312
                     ..|||||.||.||.|||.||||.||.||||||||.|||||.|||||.||.
BL01824___ycx    251 TTTTCGGGCTCGTCTACACGTCTTCGTCTGAAGCCGGAATCATTCAAGCG    300

BSNT_00631___    313 GCCATTCCGATTTTCACGATGGTCTTTGCCGCTTATGTTTTAAAGGAACG    362
                     ||.||.|||||||||||.|||.|.||.|||||||||.|||||||.||.||
BL01824___ycx    301 GCGATCCCGATTTTCACCATGATATTCGCCGCTTATTTTTTAAATGAGCG    350

BSNT_00631___    363 CCCAACGTGGACGCAAAAGGG--------GTTCACGGTTTTATCCGTTGC    404
                           ||..|||  |||.||        .||.||.||.||.||.|..||
BL01824___ycx    351 ------GTTTACG--AAACGGCAATTCTTTTTTACCGTCTTGTCAGCGGC    392

BSNT_00631___    405 CGGCGT------CATGTTTATTTTTGTGATGAAAGGCGTTGACGTGGAAT    448
                     .||.||      |||.||||      ||||||||.|.|            
BL01824___ycx    393 GGGGGTGGCCTGCATCTTTA------TGATGAAAAGTG------------    424

BSNT_00631___    449 CAGCCAGC------------TTAAAAGGGTCTTTGCTGATCCTATTGTC-    485
                     |||.||.|            ||||.||||.|...||||||..|..|.|| 
BL01824___ycx    425 CAGGCACCGGAAGTTCCGATTTAAGAGGGGCGGCGCTGATTTTGCTTTCG    474

BSNT_00631___    486 -CGCTTTGTCCTCAGCGATGTACAATAC-TGCT-GCCAGAAAAATGACGC    532
                      |||||  ||.||.|||...||||  .| |||| ||||||||.|||||||
BL01824___ycx    475 GCGCTT--TCATCGGCGGGCTACA--GCGTGCTCGCCAGAAAGATGACGC    520

BSNT_00631___    533 --AGCGGTTCAAGCTGACCGAGCTCACCT------ACATCATGTCAGCCA    574
                       |.|  |||          |||||.|.|      |||| ||||||  ||
BL01824___ycx    521 GAACC--TTC----------AGCTCGCTTGAATTAACAT-ATGTCA--CA    555

BSNT_00631___    575 TCGG-----------CTTTGTCGTCTTCAACGCCATCGCCCTTGTGCGTC    613
                     .|||           ||||    |.|||||||.|||||||          
BL01824___ycx    556 ACGGGAGCGGGATTTCTTT----TTTTCAACGGCATCGCC----------    591

BSNT_00631___    614 ATGGAGCGGCGGGAA------------CAGTCGGCA-------CTTATTT    644
                                ||||            |||.|||||       |..||||
BL01824___ycx    592 -----------GGAATCAGCCATATGTCAGACGGCACGCTGAGCGGATTT    630

BSNT_00631___    645 TCTG--CCGTTCCGGGAGCCCGGCTTCGTTC--TCGCCATTGTGTATTTG    690
                     |.||  ||.|||...||.||.|..||.||||  |||..||  |||||||.
BL01824___ycx    631 TTTGCCCCCTTCACTGATCCGGTGTTTGTTCTTTCGGTAT--TGTATTTA    678

BSNT_00631___    691 GGCGTGCTGTCTTCACTTGTCACTTCATTTCTGTCTAACTATACGCTGTC    740
                     ||||||.||||.||..|||..||.||||||.|.||.||.|||.|.|||||
BL01824___ycx    679 GGCGTGTTGTCATCGTTTGCGACATCATTTTTATCAAATTATGCACTGTC    728

BSNT_00631___    741 GCGAATTGAGGCGTTTAAAATGAG--TGCTTTTAATCATGTATCTACCAT    788
                     ...|||.||.||....|||||.||  ||  ||||||||..|..|.||..|
BL01824___ycx    729 AAAAATAGAAGCTGCGAAAATCAGCATG--TTTAATCACTTGGCGACACT    776

BSNT_00631___    789 TGTGACGATGATTGCAGGAGTTAT----------GATTCTCAACGAAAGC    828
                     .||||||||..|.||.||..||||          ||.||.| .||||   
BL01824___ycx    777 GGTGACGATTTTGGCGGGGATTATATGGCTGGGAGAATCAC-TCGAA---    822

BSNT_00631___    829 CTGGCCTGGTATCATCTT-GCCGGGGCTGTTTGTATTATGATTGGCG---    874
                           ||||.||| ||| |||||..|.|   |.||.||.||||.||   
BL01824___ycx    823 ------TGGTTTCA-CTTCGCCGGAACGG---GGATGATCATTGCCGGAA    862

BSNT_00631___    875 -TGGTGGGGAGCAATATCAATCTGGAGAAAAAAACAAAGCGCCCTGGTAT    923
                      |..|||||.| |..||...|| ||.|..||||.|               
BL01824___ycx    863 TTATTGGGGCG-ACGATGGTTC-GGCGGGAAAATC---------------    895

BSNT_00631___    924 GCCTGCAAAAAAA--TGA    939
                     |.||| |||||||  |||
BL01824___ycx    896 GGCTG-AAAAAAAGCTGA    912


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