Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00631 and BL01824
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence dna-align/BSNT_00631___ycxC.1.5803.seq
# -bsequence dna-align/BL01824___ycxC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00631___ycxC-BL01824___ycxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00631___ycxC-BL01824___ycxC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00631___ycxC
# 2: BL01824___ycxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1068
# Identity: 599/1068 (56.1%)
# Similarity: 599/1068 (56.1%)
# Gaps: 285/1068 (26.7%)
# Score: 1548.5
#
#
#=======================================
BSNT_00631___ 1 ATGGTTAAACATCAGCAAGCCCCCGCTTATATAGCGGCTA--TTT--TAT 46
||.|||| || .|.|||||| ||||| | ||| |.|
BL01824___ycx 1 ----TTGAACA-----AA---TCTGCTTAT---GCGGC-AGCTTTGCTCT 34
BSNT_00631___ 47 ATTCGTTCATTATCGGTTTATCCTTTCTATTCGTAAAA----ATCGCACT 92
||.|.||.||.||.||.||.||||||.|.||.||.||| .||.||||
BL01824___ycx 35 ATGCTTTTATCATTGGATTTTCCTTTTTCTTTGTCAAATTGGCTCTCACT 84
BSNT_00631___ 93 GCAAACAGCAGAG-CCGTTTGATATTTTGGCGCATCGGTTCACCATTGCG 141
| |||| ||| |||.|.||.|||.||||.|||||.||.||..|.||.
BL01824___ycx 85 G----CAGC-GAGTCCGGTCGACATTCTGGCCCATCGCTTTACGGTCGCT 129
BSNT_00631___ 142 TTT---GCTGCGGCGACTGTACCGATCTTAT-----------TCGGCTGG 177
||| |||||| ||||| ||||.|||
BL01824___ycx 130 TTTTTGGCTGCG--------------CTTATTCCCCTTCTGCTCGGATGG 165
BSNT_00631___ 178 GTAAAGCTATCAATCCGCGTAAAGGACGTCATTGCCATTTTGCCGCTCGC 227
||.|||.|..|.|||.||.||||.|||| ||.|| |...|||.||
BL01824___ycx 166 GTGAAGATCGCCATCAGCATAAAAGACG-CACTG--AAAGTGCTGC---- 208
BSNT_00631___ 228 CCTGCTGTATCCCGCGTTATTTT------TCA--------GC-TTTCAGG 262
||.|| ||.||||||| ||| || |||||.|
BL01824___ycx 209 ----CTTTA----GCATTATTTTACCCTGTCATGTTTTTTGCTTTTCAAG 250
BSNT_00631___ 263 CATTCGGCCTTGTGTACTCGTCCTCCTCTGAAGCGGGAATTATTCAGGCA 312
..|||||.||.||.|||.||||.||.||||||||.|||||.|||||.||.
BL01824___ycx 251 TTTTCGGGCTCGTCTACACGTCTTCGTCTGAAGCCGGAATCATTCAAGCG 300
BSNT_00631___ 313 GCCATTCCGATTTTCACGATGGTCTTTGCCGCTTATGTTTTAAAGGAACG 362
||.||.|||||||||||.|||.|.||.|||||||||.|||||||.||.||
BL01824___ycx 301 GCGATCCCGATTTTCACCATGATATTCGCCGCTTATTTTTTAAATGAGCG 350
BSNT_00631___ 363 CCCAACGTGGACGCAAAAGGG--------GTTCACGGTTTTATCCGTTGC 404
||..||| |||.|| .||.||.||.||.||.|..||
BL01824___ycx 351 ------GTTTACG--AAACGGCAATTCTTTTTTACCGTCTTGTCAGCGGC 392
BSNT_00631___ 405 CGGCGT------CATGTTTATTTTTGTGATGAAAGGCGTTGACGTGGAAT 448
.||.|| |||.|||| ||||||||.|.|
BL01824___ycx 393 GGGGGTGGCCTGCATCTTTA------TGATGAAAAGTG------------ 424
BSNT_00631___ 449 CAGCCAGC------------TTAAAAGGGTCTTTGCTGATCCTATTGTC- 485
|||.||.| ||||.||||.|...||||||..|..|.||
BL01824___ycx 425 CAGGCACCGGAAGTTCCGATTTAAGAGGGGCGGCGCTGATTTTGCTTTCG 474
BSNT_00631___ 486 -CGCTTTGTCCTCAGCGATGTACAATAC-TGCT-GCCAGAAAAATGACGC 532
||||| ||.||.|||...|||| .| |||| ||||||||.|||||||
BL01824___ycx 475 GCGCTT--TCATCGGCGGGCTACA--GCGTGCTCGCCAGAAAGATGACGC 520
BSNT_00631___ 533 --AGCGGTTCAAGCTGACCGAGCTCACCT------ACATCATGTCAGCCA 574
|.| ||| |||||.|.| |||| |||||| ||
BL01824___ycx 521 GAACC--TTC----------AGCTCGCTTGAATTAACAT-ATGTCA--CA 555
BSNT_00631___ 575 TCGG-----------CTTTGTCGTCTTCAACGCCATCGCCCTTGTGCGTC 613
.||| |||| |.|||||||.|||||||
BL01824___ycx 556 ACGGGAGCGGGATTTCTTT----TTTTCAACGGCATCGCC---------- 591
BSNT_00631___ 614 ATGGAGCGGCGGGAA------------CAGTCGGCA-------CTTATTT 644
|||| |||.||||| |..||||
BL01824___ycx 592 -----------GGAATCAGCCATATGTCAGACGGCACGCTGAGCGGATTT 630
BSNT_00631___ 645 TCTG--CCGTTCCGGGAGCCCGGCTTCGTTC--TCGCCATTGTGTATTTG 690
|.|| ||.|||...||.||.|..||.|||| |||..|| |||||||.
BL01824___ycx 631 TTTGCCCCCTTCACTGATCCGGTGTTTGTTCTTTCGGTAT--TGTATTTA 678
BSNT_00631___ 691 GGCGTGCTGTCTTCACTTGTCACTTCATTTCTGTCTAACTATACGCTGTC 740
||||||.||||.||..|||..||.||||||.|.||.||.|||.|.|||||
BL01824___ycx 679 GGCGTGTTGTCATCGTTTGCGACATCATTTTTATCAAATTATGCACTGTC 728
BSNT_00631___ 741 GCGAATTGAGGCGTTTAAAATGAG--TGCTTTTAATCATGTATCTACCAT 788
...|||.||.||....|||||.|| || ||||||||..|..|.||..|
BL01824___ycx 729 AAAAATAGAAGCTGCGAAAATCAGCATG--TTTAATCACTTGGCGACACT 776
BSNT_00631___ 789 TGTGACGATGATTGCAGGAGTTAT----------GATTCTCAACGAAAGC 828
.||||||||..|.||.||..|||| ||.||.| .||||
BL01824___ycx 777 GGTGACGATTTTGGCGGGGATTATATGGCTGGGAGAATCAC-TCGAA--- 822
BSNT_00631___ 829 CTGGCCTGGTATCATCTT-GCCGGGGCTGTTTGTATTATGATTGGCG--- 874
||||.||| ||| |||||..|.| |.||.||.||||.||
BL01824___ycx 823 ------TGGTTTCA-CTTCGCCGGAACGG---GGATGATCATTGCCGGAA 862
BSNT_00631___ 875 -TGGTGGGGAGCAATATCAATCTGGAGAAAAAAACAAAGCGCCCTGGTAT 923
|..|||||.| |..||...|| ||.|..||||.|
BL01824___ycx 863 TTATTGGGGCG-ACGATGGTTC-GGCGGGAAAATC--------------- 895
BSNT_00631___ 924 GCCTGCAAAAAAA--TGA 939
|.||| ||||||| |||
BL01824___ycx 896 GGCTG-AAAAAAAGCTGA 912
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