Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00599 and BL01818

See Amino acid alignment / Visit BSNT_00599 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:13
# Commandline: needle
#    -asequence dna-align/BSNT_00599___yckB.1.5803.seq
#    -bsequence dna-align/BL01818___yckB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00599___yckB-BL01818___yckB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00599___yckB-BL01818___yckB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00599___yckB
# 2: BL01818___yckB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 901
# Identity:     629/901 (69.8%)
# Similarity:   629/901 (69.8%)
# Gaps:          62/901 ( 6.9%)
# Score: 2057.5
# 
#
#=======================================

BSNT_00599___      1 GTGAAATCATTCAAGCA-----ATCCAAAGC-CGTTATATTCAGTT--TC     42
                     |||||...|||   |||     ||   |||| |.|||.|||  |||  |.
BL01818___yck      1 GTGAATAAATT---GCATACGTAT---AAGCGCATTACATT--GTTGATA     42

BSNT_00599___     43 ACAATG-----GCTTTCTTTCTTATATTGGCAGCCTGTTCCGGCA-----     82
                     ||..||     ||||.|  |||||||...||.||.||   |.|||     
BL01818___yck     43 ACTGTGTTGGCGCTTGC--TCTTATAACAGCTGCATG---CAGCACAGCT     87

BSNT_00599___     83 -AAAATGAAGCCGATTCCAAGGATACAGGCTGGGAGCAAATCAAGGACAA    131
                      |||||.|.||.||...|||..|.||.|.||||||..|.||.|||||.||
BL01818___yck     88 CAAAATAAGGCTGAAAACAAAAAAACGGCCTGGGATGAGATAAAGGAAAA    137

BSNT_00599___    132 AGGGAAAATCGTAGTCGCTACATCAGGTACGCTCTACCCCACTTCTTATC    181
                     ||||||.|||||.||.||.||.|||||.||.||.|||||||||||.||||
BL01818___yck    138 AGGGAAGATCGTGGTAGCGACTTCAGGAACCCTTTACCCCACTTCATATC    187

BSNT_00599___    182 ACGATACTGACTCAGGCTCCGATAAGCTGACGGGCTACGAGGTTGAAGTT    231
                     |.||.|||||.||.|||...||.||||||||.||||||||.||||||||.
BL01818___yck    188 ATGACACTGATTCCGGCAAGGACAAGCTGACCGGCTACGAAGTTGAAGTC    237

BSNT_00599___    232 GTTCGTGAAGCGGCAAAACGCCTGGGACTGAAGGTTGAGTTCAAGGAGAT    281
                     .|.|||||||||||..||||.||.|..|||.|.||.||.||.||.||.||
BL01818___yck    238 ATCCGTGAAGCGGCTGAACGGCTCGACCTGGATGTCGAATTTAAAGAAAT    287

BSNT_00599___    282 GGGCATTGACGGGATGCTGACAGCGGTGAACAGCGGACAGGTTGACGCAG    331
                     ||||.|||||||.||||||||.||||||...||||||||.||.|||||.|
BL01818___yck    288 GGGCTTTGACGGCATGCTGACTGCGGTGGGGAGCGGACAAGTAGACGCTG    337

BSNT_00599___    332 CCGCGAATGACAT--CGATGTGACGAAGGACCGC-GAGAAGAAGTTCGCA    378
                     ||||.||.||.||  |||  ||||..|.|||||| .|||| |||||    
BL01818___yck    338 CCGCCAACGATATTACGA--TGACAGACGACCGCAAAGAA-AAGTT----    380

BSNT_00599___    379 TTT----TCTACTCCATATAAATATTCATACGGTACGGCAATTGTCCGAA    424
                     |||    |||||.||.|||||||||||||.|||.|||||.||.|||||.|
BL01818___yck    381 TTTGTTCTCTACGCCTTATAAATATTCATTCGGAACGGCTATCGTCCGCA    430

BSNT_00599___    425 AAGACGATTTATCAGGGATTAAAACGCTTAAGGATTTAAAAGGGAAGAAA    474
                     ||.|.||.||||||||.||..|.||||||.||||.||||||||.||||||
BL01818___yck    431 AAAAAGACTTATCAGGCATCCACACGCTTGAGGACTTAAAAGGAAAGAAA    480

BSNT_00599___    475 GCGGCTGGCGCGGCTACAACCGTCTACATGGAGGTCGCGAGAAAATACGG    524
                     ||.|||||.||.|||||.||.||.||||||||..||||..|.||||||||
BL01818___yck    481 GCCGCTGGTGCAGCTACGACAGTTTACATGGATATCGCACGCAAATACGG    530

BSNT_00599___    525 CGCCAAAGAAGTGATTTATGATAATGCGACGAATGAGCAATATTTAAAAG    574
                     .||..|.|||||.|||||.||.||.|||||.|||||.||||.||||||.|
BL01818___yck    531 AGCAGAGGAAGTCATTTACGACAACGCGACAAATGATCAATTTTTAAAGG    580

BSNT_00599___    575 ATGTTGCCAACGGACGCACTGACGTCATTTTAAACGACTATTACCTGCAG    624
                     ||||.||.||.|||.|.||.||||||||.|||||||||||.|||||.||.
BL01818___yck    581 ATGTAGCGAATGGAAGAACCGACGTCATCTTAAACGACTACTACCTTCAA    630

BSNT_00599___    625 ACACTTGCGCTCGCGGCATTCCCGGATCTCAACATTACAATTCATCCTGA    674
                     |..||.||||||||.|||.|.||.|||||..|..|.|||||||||||.||
BL01818___yck    631 AAGCTCGCGCTCGCCGCAATGCCTGATCTGGATCTGACAATTCATCCCGA    680

BSNT_00599___    675 CATCAAGTAC-ATGCCGAACAAACAGGCCCTTGTCATGAAAAA---AAGC    720
                     ..|.||.||| || |||.|..|.||.|.|.|..||||||||||   ||.|
BL01818___yck    681 TCTTAAATACTAT-CCGCATCAGCAAGGCATGATCATGAAAAAAGGAAAC    729

BSNT_00599___    721 AATGAGGCACTTCAGAAAAAGATGAACGAAGC-ATTGAAAGAGATGAGCA    769
                     |.|||   ||||.|.|||.|..|..||.||.| |||| |.||.|||...|
BL01818___yck    730 ACTGA---ACTTAAAAAACAATTCGACAAAACGATTG-ATGAAATGCTGA    775

BSNT_00599___    770 AGGATGGCTCTTTGACTAAACTGTCGAAACAATTCTTCAATAAAGCAGAT    819
                     ||||.|||.|..|.|..||..|.||||||.|.||.|||......||.|||
BL01818___yck    776 AGGACGGCACAATCAAAAAGATTTCGAAAAAGTTTTTCGGCGGTGCCGAT    825

BSNT_00599___    820 GTATCAAAAAAAATTGATGCCGACGTTCAGGACGTTGATTTG--TAA---    864
                     ||.||.|||||....|||..||||..|...||.||.|||.||  |||   
BL01818___yck    826 GTTTCGAAAAAGCAGGATATCGACTATATCGATGTCGATGTGAATAAATA    875

BSNT_00599___    864 -    864
                      
BL01818___yck    876 G    876


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00599 and BL01818

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
