Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00547 and BL01813
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:10
# Commandline: needle
# -asequence dna-align/BSNT_00547.1.5803.seq
# -bsequence dna-align/BL01813___ycgH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00547-BL01813___ycgH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00547-BL01813___ycgH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00547
# 2: BL01813___ycgH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1370
# Identity: 344/1370 (25.1%)
# Similarity: 344/1370 (25.1%)
# Gaps: 901/1370 (65.8%)
# Score: 1018.0
#
#
#=======================================
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 1 ATGAAACGACAAGCGAAAAAAGGAGATTTAAAATGGTGGCAGCTGTCCAT 50
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 51 GATCGGGGTCGGCTGCACAATTGGAACGGGGTTTTTCCTCGGCTCAAGCA 100
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 101 TCGCGATTAAGAAAAGCGGCTTTTCCGTATTAGCCGCCTTTCTTCTTGCT 150
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 151 GCCCTTGGCACTTTTCTTGTTTTTCAGCAGCTGGCGAAATTAACGGCAGA 200
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 201 TCATCCTGTTGAAGGGTCTTTTTGTTCTTACGCCAGAGAGGCCTTCGGCA 250
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 251 ATTGGGCGGGGTTTAGCAATGGCTGGGTCTACTGGTCATCGGAAATGCTG 300
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 301 ATCATCGGGAGCCAGTTGACAGCGATTTCCCTGTTTACGCGCCATTGGTT 350
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 351 TAACGAGATTCCGCTGTGGGTGTTCGCCTCTATTTATGCGATTCTCGGAT 400
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 401 TGATCGTCATTTTCACAGGGCGCAGCAGCTTTGAAAAAACGGAAAACATA 450
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 451 TTGGCCGTGTTGAAAACGGCGGCCATTTTAATGTTTATCATCATCGCTGT 500
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 501 CTTGGCATTGTGCGGGCTGCTGCCTGGAAAAACGCCTGAAGTGCAGTTCC 550
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 551 CTGACCGGGTTCACGAATTGTTTCCTTTCGGCTTTATGGGATTGTGGACG 600
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 601 GGGTTGATTTATACATTTTACGCTTATGGAGGAATCGAAGTCATGGGTCT 650
BSNT_00547 0 -------------------------------------------------- 0
BL01813___ycg 651 GATGGCGATTCACTTAAAAGACCCGAAGGATTCATCAAAGTCAGGCAGCC 700
BSNT_00547 1 --ATGCTGGCGACGCTGGCGATTATTTATATCATTTCAATCGGGCTTGCT 48
|||||....||.||.||..|..|.||..||.|.||.||||||||.||.
BL01813___ycg 701 TGATGCTCATAACCCTTGCTGTGGTCTACGTCGTATCGATCGGGCTGGCC 750
BSNT_00547 49 CTGCTTTTGGTTCCGTTACACGCG-----TTTACTGAACAGGACAGTCCG 93
.||||..|.||.| |||||| ||.||.||||||.||||.|||
BL01813___ycg 751 ATGCTCCTTGTAC-----CACGCGGAACATTCACCGAACAGAACAGCCCG 795
BSNT_00547 94 TTCATTACATCATTAAAAGGATATAACCTTGAGATCATCCTTGATATATT 143
||.|||||.||||||||||..|.|.|.||.||..|.|||.|.|||||.||
BL01813___ycg 796 TTTATTACGTCATTAAAAGACTTTCATCTCGATTTGATCATGGATATTTT 845
BSNT_00547 144 TAACGGGATTTTCATCATCGCCGGGTTCTCGACCCTTGTCGCTTCGCTTT 193
.|||||.|||||.||.||.|||||.||.||.||.||...||||||.||.|
BL01813___ycg 846 CAACGGCATTTTTATTATTGCCGGTTTTTCAACGCTGACCGCTTCCCTGT 895
BSNT_00547 194 TTGCCGTTACGACATTGCTTTGTACAATGGCTGATGACGGCGACGCGCCG 243
|.|||||.||.|||.||.|..|.||||||||..|..||||.||.||.|||
BL01813___ycg 896 TCGCCGTCACCACACTGATGGGAACAATGGCGAAAAACGGGGATGCACCG 945
BSNT_00547 244 AAATGCTTTACTCTAAAGG--AAGGCAAAAAAATATGCTGGCCGGCACT- 290
...||||||.|...|||.| ||||| .|||.|||..|||||||||||
BL01813___ycg 946 GCCTGCTTTGCCAAAAAAGAAAAGGC--GAAAGTATCGTGGCCGGCACTC 993
BSNT_00547 291 --TCTGAC-GTTTGCGGGGCTTGTCCTC------TCCATTATTCTGTCGT 331
.||||| || |||.||.||| |||||..|..|||||.
BL01813___ycg 994 GGCCTGACAGT-------GCTCGTTCTCGCTGCTTCCATCGTCTTGTCGC 1036
BSNT_00547 332 TAGTGCTGCCTAAAAACATTTATGAGCATATGACAACAGCTGCGGGGCTT 381
|..|..||||.||..|..|||||||.||.|||||.||.||.|| ..||||
BL01813___ycg 1037 TCATTTTGCCGAAGCAGCTTTATGAACACATGACGACGGCCGC-CAGCTT 1085
BSNT_00547 382 -ATGCT--TTTATACACTTGGCTGTTTATCATGTTCTCCAGCAAAAAGCT 428
||||| |.|||| || |||.||||||||.||.|.||||||||||||||
BL01813___ycg 1086 GATGCTGCTCTATA-AC-TGGATGTTTATCCTGCTTTCCAGCAAAAAGCT 1133
BSNT_00547 429 GACTGATCCCGAGGGCATGGGAAAAACGCAAAT-----TTATTGTTCTGA 473
.|| ||||.||.|||| ..|.|||.|.||
BL01813___ycg 1134 CAC------------------AAAACCGAAAATGAAAGGGAATGTCCAGA 1165
BSNT_00547 474 TTG---CTGCG------------------GCTGTGTCCGGTACATTGTTT 502
||| |.||| ||.||.||.|||||.||.|||
BL01813___ycg 1166 TTGTCACAGCGCTCGTCCTGATTTTGTTCGCCGTTTCGGGTACGTTATTT 1215
BSNT_00547 503 GA------------------------------------------------ 504
||
BL01813___ycg 1216 GAAAAAAACAGCAGACCCGGTTTTTTTGTGAGCCTTCTCTTTCTTGCCGT 1265
BSNT_00547 504 -------------------------------------------------- 504
BL01813___ycg 1266 TATTGCTGCTGTGACGATGCTCATGAAAAAAAAGTGGGCGGATCAGGAAG 1315
BSNT_00547 504 -------------------- 504
BL01813___ycg 1316 AGAAAAACGGGCAGACATGA 1335
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