Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00532 and BL01794
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:10
# Commandline: needle
# -asequence dna-align/BSNT_00532.1.5803.seq
# -bsequence dna-align/BL01794___ycgA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00532-BL01794___ycgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00532-BL01794___ycgA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00532
# 2: BL01794___ycgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1706
# Identity: 874/1706 (51.2%)
# Similarity: 874/1706 (51.2%)
# Gaps: 577/1706 (33.8%)
# Score: 1752.5
#
#
#=======================================
BSNT_00532 1 ATGAG-TATGCCAGCAGCCGAAACACAGCCTAAGAAAAAACGAATGACAT 49
||||| .||| |||.|| ||||| ||.|.||||| || ||.
BL01794___ycg 1 ATGAGCAATG---GCACCC----CACAG---AAAACAAAAC---TG-CAC 36
BSNT_00532 50 TTAAAATGCCTGACGCCTATGTCCTCTTAT--TTATGATTGCTTTCATTT 97
|| || |.|.|| ||||| || |||||..|||||||.
BL01794___ycg 37 TT------CC---CACATA------CTTATGCTT-TGATTTTTTTCATTA 70
BSNT_00532 98 GC---------GCAATCGCTTCATATATTGTGCCGGCAGGTGAATTTGAC 138
.| |||.|.||||||||..|..|.||..||||.||||||.|.
BL01794___ycg 71 TCATTTTAGCTGCACTGGCTTCATACTTCATTCCATCAGGAGAATTTAAG 120
BSNT_00532 139 CGCG-TGACAAAGGGGGATGTCACG-----ACCGCT---GTTCCGGGAAG 179
||.| |||..||| ||| ||.|.| ||.|..||.||
BL01794___ycg 121 CGGGTTGAAGAAG---------ACGGCCAAACGGTTATCGTACAAGGGAG 161
BSNT_00532 180 CTATCATTCA-ATTGA-ACAGTCTCCGGTCAGCTTGATC-AGCTTTTTTA 226
||| ||..|| |.||| .||| .|||||||.|.||..|| || .|.||||
BL01794___ycg 162 CTA-CAAGCAGACTGACGCAG-GTCCGGTCGGTTTTTTCGAG-ATGTTTA 208
BSNT_00532 227 CTTCTCTACAGGATGGAATGGTTGGATCAGCACCCATCATCTTTCTGATT 276
...|..|||.|||.||.|||.||..|||.||....||.||.|||...||.
BL01794___ycg 209 AAGCCATACCGGAGGGCATGATTCAATCGGCGGATATTATTTTTTATATC 258
BSNT_00532 277 CTATTCACAGGCGGCACCATTGCTATTCTAGAAAAAACGGGTGCCATCAA 326
.|.||.|.||||||..|..|||..||..| ||||||
BL01794___ycg 259 TTTTTAATAGGCGGAGCTTTTGGCATCAT--------------CCATCA- 293
BSNT_00532 327 TGGCC----TGATT----------TACAATGTCAT----CAGC------- 351
|.|| ||||| | |.||||..| ||||
BL01794___ycg 294 -GACCGGTATGATTCGCGCCGGTGT-CCATGTGCTCGTGCAGCGCTTGAA 341
BSNT_00532 352 -AAA------TTCCGCACAAAGCAATTATTATTTATTTGTATTGTCGGCG 394
||| ||||.| .|| ||...||.|.
BL01794___ycg 342 GAAACGCGGCTTCCTC--------------------CTG-ATCCCCGTCA 370
BSNT_00532 395 CATTGTTC-TCCATTC--TCGG------AACAACCGGGATTGTCGTGAAT 435
|..||||| ||..||| |||| |||.|.| ||.||||| ||||
BL01794___ycg 371 CCATGTTCGTCTTTTCCATCGGAGGCGCAACGATC-GGTTTGTC-TGAA- 417
BSNT_00532 436 TCAG----TTATCGGTTTTATCCCCATCGGCCTCATTGTGGCACGATCCT 481
.|| |||| ||||||.||.|||||
BL01794___ycg 418 -GAGACGATTAT---TTTTATTCCGATCGG-------------------- 443
BSNT_00532 482 TAAAATGGGACGCAGTCGCGGGAGCCGCT--GTTAT-------TTACATC 522
||| |||.||.|||.||| |||| |.||| |.||| .
BL01794___ycg 444 ---AAT----CGCTGTTGCGAGAG-CGCTTGGCTATGATTCAATGACA-G 484
BSNT_00532 523 GGCTGCTACGCTGGATTTAACTC-------------------CAC----- 548
||||| .||.| ||||| ||| |||
BL01794___ycg 485 GGCTG--GCGAT-GATTT--CTCTAGGCGCGGCTGCAGGGTTCACCGGCG 529
BSNT_00532 549 -CATATT--ATCACCG-TCACCGCTCGGTTTATCACAATCAATCGCGGAG 594
|||.|| || ||| ||||.| ||||..|..||||..||||.|||||.
BL01794___ycg 530 GCATGTTGAAT--CCGTTCACAG-TCGGAATTGCACAGACAATTGCGGAA 576
BSNT_00532 595 CTCCCTCTTTTTTCTGGAATCGGCCTGCGAGTTGTGATATACATATG--C 642
.||||..|.||| |.| ||||.|| ||.|||.|| || |
BL01794___ycg 577 GTCCCGGTGTTT------AGC-GCCTTCG----GTTATAGAC---TGGCC 612
BSNT_00532 643 TTTT---------TGCT--GTCTTCT--ATTATTTATATCTATTTGTATA 679
.||| |||| || |||| |||.|||||.|| ||.
BL01794___ycg 613 GTTTATGCCGCCATGCTCGGT-TTCTCCATTTTTTATGTC-------ATG 654
BSNT_00532 680 CGAGAAAATTA-----AAAAAATCAAAAGATGCCAGTGTGTTAGGAACAG 724
|| ||| ||.||.||||| || |.|.|.|
BL01794___ycg 655 CG------TTATGCTCAACAAGTCAAA----GC----------GCACCCG 684
BSNT_00532 725 ATT---GGTTCCCTGCGGCAGGAATGG--GCGAAGC--CGGTAAA-GAAG 766
|.| |||| || |.|.|||| |||||.| .|.|||| ||||
BL01794___ycg 685 AATACCGGTT---TG----ATGTATGGAAGCGAAACAGAGATAAATGAAG 727
BSNT_00532 767 AAGATCAGC--CAG-------------TGCCGTTTACCG----------- 790
||| |||| ||| |.|| ||.||||
BL01794___ycg 728 -AGA-CAGCCGCAGGACACGCTGATCTTTCC-TTCACCGGAAGACACGGC 774
BSNT_00532 791 TTCGCCATAAGCTGAT-------TTTGGCTGTGGCGGGACTCTCACT-TG 832
.|||.|.| |||||| ||.||||..||| .|||.| ||
BL01794___ycg 775 CTCGTCCT--GCTGATTACAGCATTGGGCTTCGGC------ATCAATATG 816
BSNT_00532 833 -TCGGATTTTT---ATACGG--CGCTTTGAAGCTTG-GCTGGTCAGATTC 875
||||..|||| ||..|| .|.|||.|||| | ||| |||.|
BL01794___ycg 817 TTCGGTGTTTTTCAATGGGGATGGTTTTTAAGC--GAGCT-GTCGG---- 859
BSNT_00532 876 CCAAATGGCTGCGACATTTATTTTTAT-TTCTGTCCTT----GCCGGTTT 920
|| |||| ||.|.|| .||.| ||| ||||||
BL01794___ycg 860 CC----GGCT----------TTCTCATCATCGG--CTTTGCCGCCGGT-- 891
BSNT_00532 921 AATAGGCAGACTTGCGG-----CGAACGATATTGCCAAAACCTT-CATT- 963
||||||| || ||..||...|||.||||| ||||
BL01794___ycg 892 ----------CTTGCGGGAGGACG--CGGCATCAACAACACCTTCCATTC 929
BSNT_00532 964 --------ACGGGCTGCCAAAGCCTTGTATATGGGGCGCTGATTGTCGGG 1005
||||..||..|.|| .|||||||.||.||||||||.|||||.
BL01794___ycg 930 GTTTGTCGACGGCATGAAACAG-GTTGTATACGGAGCGCTGATCGTCGGC 978
BSNT_00532 1006 ATGGCACGAAGCATTTCCGTTATC---CTTGAAAATGGAAAGCTTCTCGA 1052
.|.||.||...||| |||.||| .|.|||||.|||.|..||.||||
BL01794___ycg 979 TTCGCCCGTGCCAT---CGTCATCGTATTGGAAAACGGACATATTATCGA 1025
BSNT_00532 1053 TACTGTCGTCAA-TGCTTTGGCTTCACTTTTGGACGGATTCAGCCCGATT 1101
|||..||.|||| .||.|| |||||| |.|.|||||.||.||
BL01794___ycg 1026 TACGATCATCAACAGCCTT-GCTTCA---------GCAATCAGCTCGCTT 1065
BSNT_00532 1102 GCCG----------GGGCAATCGGCATGTATATCGCCAGT-------GCG 1134
||| |.||.|||||||||| ||||| || |||
BL01794___ycg 1066 -CCGAATGAAATCAGCGCCATCGGCATGT---TCGCC-GTACAAATCGCG 1110
BSNT_00532 1135 CTGCTTCATTTTCTCATCTCTTC--------AG-GGTCTGG--------- 1166
|||..|.|.|.|.||| || ||.|.||
BL01794___ycg 1111 -------ATTAACACGTTTATTCCATCCGGAAGCGGACAGGCAGCCACAA 1153
BSNT_00532 1167 CGAAGCCGTTGTATTTATTCCAATCCTGGCGCCGCTCGCTGATTTGATGG 1216
|||.|||| .||| |||||||.||.||.|||||..|||
BL01794___ycg 1154 CGATGCCG-----CTTA---------TGGCGCCTCTGGCCGATTTATTGG 1189
BSNT_00532 1217 AAATCACGA--GACAGGTTGCGGTGGAGGCGGTTATGCTT--GGAGAAGG 1262
.|.| ||| |.|||.||||.|| |..||.||||...| |||||.||
BL01794___ycg 1190 GATT--CGAACGTCAGATTGCCGT--ATTCGCTTATCAATACGGAGATGG 1235
BSNT_00532 1263 GGTCGTCAACTGTGTGAACCCGACATCCGGCGTTCTCATGGCAGTGCTTG 1312
|.||..|||||...|.|.||||||.|||||||| |.||||.|
BL01794___ycg 1236 GATCACCAACTCAATCATCCCGACCTCCGGCGT---------ATTGCTGG 1276
BSNT_00532 1313 CCGCCAGCGGTATTCCGTA-TGTCAAGTGGCTGCGGT---TTATGGTGCC 1358
| ||| | |||||| |.||.|..|| ||||| ..|
BL01794___ycg 1277 C-----------TTC---ACTGTCAA-TCGCAGGCGTCCCTTATG--AAC 1309
BSNT_00532 1359 GCTTGCTCTGATTTGGTTCT------TGATCG--GGCTTGTCTTTATCGT 1400
|||.|.||...|||| ||| |||||| ||||.| .|||||
BL01794___ycg 1310 GCTGGGTCAAGTTTG--TCTGGAAGCTGATCGCAGGCTGG--ATTATC-- 1353
BSNT_00532 1401 GATCGGCGTC------------------ATGATCAATTGGGGGCCGTTTT 1432
|||||||.| ||||| ||||| ||.||
BL01794___ycg 1354 -ATCGGCGCCGCTGCGATTGTTATCGCTATGAT-AATTG------GTATT 1395
BSNT_00532 1433 AA---- 1434
||
BL01794___ycg 1396 AAGTAA 1401
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