Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00481 and BL01791
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_00481___yczC.1.5803.seq
# -bsequence dna-align/BL01791___yczC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00481___yczC-BL01791___yczC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00481___yczC-BL01791___yczC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00481___yczC
# 2: BL01791___yczC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 454
# Identity: 237/454 (52.2%)
# Similarity: 237/454 (52.2%)
# Gaps: 131/454 (28.9%)
# Score: 519.0
#
#
#=======================================
BSNT_00481___ 1 TTGGAACTA-GCTGGTTTCATGCT--GCGCGCCTGCGCTCTTTTACTTGA 47
|||.|| || |||.||||...|.| |.|||..||| |
BL01791___ycz 1 TTGCAA-TACGCTCGTTTTTGGGTTAGAGCGGGTGC-------------A 36
BSNT_00481___ 48 TG--TAATC-ATTGCCGCAGCAGTGATTTTGGCAGCCGGATT-------- 86
|| |.||| ||||| .|.|||||.|.|||.||
BL01791___ycz 37 TGGTTGATCGATTGC----------GTATTGGCGGTCGGGTTACACTTTT 76
BSNT_00481___ 87 --TACG--------TTTGGCGATGGGTCCGCCGGTGTCATTA--TT---- 120
|.|| ||.|||||.||.|| ||||.| ||
BL01791___ycz 77 CATCCGCATGGATATTCGGCGACGGATC--------TCATGAAGTTGCTG 118
BSNT_00481___ 121 --GTCGCCATATTGATGCTG------ATTGTGTACCCTTTGCTGATGCCG 162
|.|||| .||||| .||.||||.||..|.|||||||||
BL01791___ycz 119 CAGCCGCC------CTGCTGGTATACGTTTTGTATCCGCTTCTGATGCCG 162
BSNT_00481___ 163 CTGACAAATTGGAAGGGCAC-ACTGG----GCAA-----AAAAATCATCG 202
||||||||.....||||||| |.||| |||| |.||.||.|
BL01791___ycz 163 CTGACAAAGCTCCAGGGCACGATTGGAAAAGCAATTTTTAGAATTCGT-- 210
BSNT_00481___ 203 GGCTGCAAATCG-------TGA---GGGACGAAACATATAAAAAAATATC 242
|||| ||| |||.|||...|| ||..
BL01791___ycz 211 --------ATCGTTTCTGATGATACGGGCCGACGGAT---------TAAG 243
BSNT_00481___ 243 CTTCCCGCAAGCCATTGTCCGTTACCTGATAGCGTGGGTGCATGTGTTCT 292
||| ..|||.||..|.||.||.|||.|..|..|.|||||||||.|.||.|
BL01791___ycz 244 CTT-TGGCAGGCTTTCGTGCGCTACATCGTCTCATGGGTGCATATCTTTT 292
BSNT_00481___ 293 CCCGCCTGATCTATTTGACTGCCGCATTTACGAAGAAA--AAACAAACCG 340
.|.|.|||.|.|||||.||.|.||..|||.| ||.|| ||||||.|.|
BL01791___ycz 293 TCGGTCTGCTGTATTTAACCGTCGTTTTTTC--AGGAACGAAACAAGCGG 340
BSNT_00481___ 341 TTCATGATATGGCTGCGAAAACCAT-TGTGCTGAAA---------GCAGA 380
|.||.|||.|.||.||.|.|| ||| |||..||||| .|.||
BL01791___ycz 341 TCCACGATTTCGCGGCTAGAA-CATATGTCATGAAAACGTCCGACACTGA 389
BSNT_00481___ 381 ATAA 384
.|||
BL01791___ycz 390 GTAA 393
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