Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05742 and BL01790
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:51
# Commandline: needle
# -asequence dna-align/BSNT_05742___ywhA.1.5803.seq
# -bsequence dna-align/BL01790___ywhA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05742___ywhA-BL01790___ywhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05742___ywhA-BL01790___ywhA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05742___ywhA
# 2: BL01790___ywhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 464
# Identity: 298/464 (64.2%)
# Similarity: 298/464 (64.2%)
# Gaps: 88/464 (19.0%)
# Score: 928.0
#
#
#=======================================
BSNT_05742___ 1 ATG---GACCAT--GACAAACTGGAAGCAAATTTGCTGGATCACGCACTT 45
||| .||||| || |.|||||.|||.|..||||.||.||..|.
BL01790___ywh 1 ATGAATCACCATCGGA-----TTGAAGCGAATCTATTGGACCATGCTTTC 45
BSNT_05742___ 46 ACAAAATATTTGAAAAGCACG-------AAGCAATTAGATGAAGCCACCG 88
||.||||||||| || |||.|||||||.||||..||..
BL01790___ywh 46 ACGAAATATTTG-------CGGTCTTCAAAGAAATTAGACGAAGAAACGA 88
BSNT_05742___ 89 TTCCGAAA-----CACGTG----AATAATGTAAGAGGGTTTATTCTGCGG 129
|||||||| ||||.| || ||||||||||.||||.
BL01790___ywh 89 TTCCGAAAAGTATCACGAGCGGCAA---------AGGGTTTATTTTGCGT 129
BSNT_05742___ 130 ATCATATACAGACATGGGAGCTGCACCATAAAGGATATTTTGAAGGAGGT 179
|||||.||||||||.||.|..||.||.||||||||.|||||..|||||||
BL01790___ywh 130 ATCATTTACAGACACGGAACATGTACGATAAAGGAAATTTTACAGGAGGT 179
BSNT_05742___ 180 CACACTGTCTCCCTCTGCCACGACCACAGCTCTGAATCATTTAGAGCAGG 229
|.|.||||||||.||.||.|||||.|||||||||||.|||||.|||.|.|
BL01790___ywh 180 CGCGCTGTCTCCATCAGCAACGACAACAGCTCTGAACCATTTGGAGAAAG 229
BSNT_05742___ 230 AAGGGTTTATTGA-GAGATCCAGAAATAACAATGACCGCCGCACTGTATG 278
|||||.|..||| .|||||.|||||||||.|||||||.|||||.||.||
BL01790___ywh 230 -AGGGTCTTGTGATCAGATCGAGAAATAACGATGACCGGCGCACCGTCTG 278
BSNT_05742___ 279 GATTACG--CTTTC---TGAATCGGGCCGGGGAGCGGCTGAACAAATGAT 323
||| || ||.|| .||| ||..||.|||.| ||.|.|||||||.|
BL01790___ywh 279 GAT--CGAACTGTCGCAAGAA--GGAACGAGGATC-GCCGCACAAATGGT 323
BSNT_05742___ 324 CGAAAACCGCCAGCAGC--TGATTGA---------CGGCATGTTTGAACG 362
.|||||||||||| || ||||.|| ||||| ||
BL01790___ywh 324 GGAAAACCGCCAG--GCCTTGATCGACAAGCTCTTCGGCA------AA-- 363
BSNT_05742___ 363 TTTAACAGCCGAAGAGAAAGAGACGTTCTTGGCGATTATTGCGAAGCTGG 412
||..|||..|||||.|||.||.|.||.||.||..|.||||..||..||
BL01790___ywh 364 -TTGTCAGAGGAAGAAAAAAAGGCTTTTTTTGCTGTGATTGAAAAAGTG- 411
BSNT_05742___ 413 CTCAATAG------ 420
|| |
BL01790___ywh 412 ----AT-GATGTAA 420
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