Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00370 and BL01788
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:02
# Commandline: needle
# -asequence dna-align/BSNT_00370___ybxI.1.5803.seq
# -bsequence dna-align/BL01788___blaRI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00370___ybxI-BL01788___blaRI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00370___ybxI-BL01788___blaRI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00370___ybxI
# 2: BL01788___blaRI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1921
# Identity: 579/1921 (30.1%)
# Similarity: 579/1921 (30.1%)
# Gaps: 1157/1921 (60.2%)
# Score: 1129.5
#
#
#=======================================
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 1 ATGAGCAGTTCTTTCTTTATTCCCTTTTTGGTTAGTCAAATTCTATTGTC 50
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 51 TCTGTTTTTTTCTCTCATCATACTCATAAAAAAACTGCTGAAGGCTCAAA 100
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 101 TCACTGTAGGCACCCACTATCATCTTAGCGTGATTTCTCTTTTGGCATTG 150
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 151 ATCGCTCCTTTTCTCCCCTTTCATTATCTAAAAAGCAATCATTTTGACTG 200
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 201 GATTCTGAATTTAGGAGGAGCTAGCTCAACGCTATCTCACACCCGTTCCA 250
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 251 CAGATAAGACGGCGGAAGCAATTGGCCAACATGCAAACTGGGTGCAGGAT 300
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 301 TTTTCGATGTCGATTGAACAATCGTCCTTCAAAATGATAGATTCAGCCTT 350
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 351 TTTCGCAGTCTGGATATTGGGCATTGCTGTTATGCTTATCGCTACTCTTT 400
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 401 ATAGCAATCGAAAAATCGGCAAAATAAAAAAGAGCCTGCAAATGGTTAAC 450
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 451 AACAAAGAGCTATTAACCCTTTTTCGTACATGTAAAGAGGAAATACGCTT 500
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 501 TCATCAAAAAGTGATTTTAGGCTGTTCCCCATTGATAAAATCCCCCATAA 550
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 551 CATTTGGGGTTGTCCGTCCATATATTATCTTGCCAAAGGATATTTCAATG 600
BSNT_00370___ 0 -------------------------------------------------- 0
BL01788___bla 601 TTTTCTGCCGACGAGATGAAATGTGTTTTGCTTCATGAACTGTACCATTG 650
BSNT_00370___ 1 ---------------------------------GTGCCT----------- 6
.|||||
BL01788___bla 651 TAAACGAAAAGATATGCTCATCAACTATTTTCTTTGCCTGTCCAAAATCG 700
BSNT_00370___ 7 --------TTTGAT------------TATTTTTTAAAGGAAGAACAAACG 36
|||.|| |||||.|.||||||||.|.||||
BL01788___bla 701 TCTATTGGTTTAATCCTCTCGTGTGGTATTTATCAAAGGAAGCAAAAAC- 749
BSNT_00370___ 37 AAAGAGA--GAG-------------------------AAAAGGTAGTTAA 59
||||| ||| |||.|.|.|.|||
BL01788___bla 750 --AGAGATGGAGATTTCTTGCGACTTTGCCGTATTAAAAACGCTTGATAA 797
BSNT_00370___ 60 -----------TCAAA----ACGAAGGGGAGAACAAAAT----------- 83
||||| .|| |||.||....|||||
BL01788___bla 798 AAAATTGCATCTCAAATATGGCG-AGGTGATTTTAAAATTCACTTCACTT 846
BSNT_00370___ 84 --GAAAAAATGGATATATGTTGT----GCTTGTGCTGAGTATT--GCAG- 124
|.|||.|..|..||.|.|.|| |||| |||| ||| ||||
BL01788___bla 847 AAGCAAAGAACGTCATCTTTGGTAGCCGCTT---CTGA--ATTCAGCAGC 891
BSNT_00370___ 125 ----------GGATC----GGCGGCTTCTC-----------CGTCCACGC 149
..||| |||||.||.|| |.||.|.||
BL01788___bla 892 TCATACAAACATATCAAAAGGCGGATTGTCACAGTTGTCAACTTCAAGGC 941
BSNT_00370___ 150 AGCGTCA--TCTGCTCA---TGAAAAACACTTGAATGT------------ 182
.||.||| |.||||.| ||||||.|.|.|.|.|||
BL01788___bla 942 GGCATCACCTTTGCTAAAGGTGAAAAGCGCCTTAGTGTTCGCCCTTGTTC 991
BSNT_00370___ 183 ----------------CAGCA--------GAATGAATGTCGATGATG--- 205
|.||| |.||..||.|.||..|||
BL01788___bla 992 TTGGGATCATTCTAGCCGGCACTCCTTCTGTATCTATATTGACTATGCAA 1041
BSNT_00370___ 206 --------------------------AATTCAAGGATACG--GATG---G 224
||.|..||.||||| |||| |
BL01788___bla 1042 AGAGATACGCACTTTTTATCTGGTGCAAATGTAGAATACGAAGATGACAG 1091
BSNT_00370___ 225 AACCTTCATT-----CTTCACGATTTACAAAAGGAGCAGACATTTGTC-- 267
.|||||..|| ||||.| ||||| ..||||||
BL01788___bla 1092 CACCTTTTTTGATGGCTTCTC----------AGGAG----GTTTTGTCCT 1127
BSNT_00370___ 268 -------TATAACAGAAAACGG----------GCAA-ATCAAAGACAAAC 299
|.||||||.|||..| .||| |..||||| ||.|
BL01788___bla 1128 GTTTGATTCTAACAGGAAAAAGTATACAATATACAATAGGAAAGA-AAGC 1176
BSNT_00370___ 300 TCCGC---AATC-CACCT--TT--------AAAGTCGTGAACGCTTTAAT 335
.|||| |.|| ||||| || ||.||..|.|.|||.||..|
BL01788___bla 1177 ACCGCCAGATTCGCACCTGCTTCTACATACAAGGTGTTCAGCGCATTGCT 1226
BSNT_00370___ 336 CGGTTTGCAGGTCAAAGCTGTAA---GAGATGAATACGA--------TGT 374
|| || |||.|| |.|||.|..|||| |.|
BL01788___bla 1227 CG----------CA---CTGGAATCCGGGATCATCACGAAGAACAATTCT 1263
BSNT_00370___ 375 TAAACGA--TGGGACGG-GGTCAAGCGTGAATTCG----AATCATGGAAC 417
.|||.|| |||||||| ..|||| .||.|| ||..||||||.
BL01788___bla 1264 CAAATGACGTGGGACGGAACTCAA-----TATCCGTATAAAGAATGGAAT 1308
BSNT_00370___ 418 CGCGACCA-----TACGCTTGGCTCGGCCATGCGCGAATCCGCAATCTGG 462
|..||||| || || |||.||.|||.||...|||||||..|||
BL01788___bla 1309 CAAGACCAGGATTTA---TT--CTCTGCGATGAGCAGCTCCGCAACATGG 1353
BSNT_00370___ 463 TATTATCAGGCATTAGCGAGAGATATCGGCGA---GGAAAGGATGAAAT- 508
||||.|||...|.|.| |.||||.| |||.|||||.|..|
BL01788___bla 1354 TATTTTCAAAAACTGG--------ACCGGCAAATTGGAGAGGATCATTTG 1395
BSNT_00370___ 509 CATGGCT---TCATACACTATC--TTACGGCAACGAGGA--TATCAG--C 549
|.|.||| ||| |..||||| |||.||.||.||||| |.|||| |
BL01788___bla 1396 CGTCGCTATCTCA-AATCTATCCATTATGGAAATGAGGATTTCTCAGGTC 1444
BSNT_00370___ 550 GGGGGAATCGACCAGTTTTGGCTGCAAAGCTCGC-TCACAATATCTCCGC 598
.||.|||| |.|||||||.|..||||.| ||| |||.||.||.|
BL01788___bla 1445 CGGCGAAT-------TATTGGCTGGATGGCTCTCTTCA-AATTTCCCCTC 1486
BSNT_00370___ 599 TGGAACA------------AGAAACCTTTTTGGAGAAACTA-------TT 629
|.||||| |.|||..||||..|| .|||.| ||
BL01788___bla 1487 TTGAACAGGTTAATATGTTAAAAAAGTTTTATGA-TAACGAATTTGATTT 1535
BSNT_00370___ 630 TAAAGAGGAGCTTCCATTTGACAAACCGGTGATGAAA--------ACCGT 671
||||.|| ||.|.|...|||||.| ||||| ||..|
BL01788___bla 1536 TAAACAG-----TCTAATATTCAAACTG----TGAAAGATTCGATACGTT 1576
BSNT_00370___ 672 CAAGCGCATGATGATTCAAGAGGAAGGC-GATCATTACACGCTCTACGGG 720
.| ||.||.|||| |.||| || ||| ||.|.|||.
BL01788___bla 1577 TA-------GAAGAATCAA----ATGGCAGA--ATT-----CTATCCGGT 1608
BSNT_00370___ 721 AAAACCGGAACTCGCCTGACTGAT-ATGGGATTA---------GGATGGT 760
||||||||.||| |.|.|.|| |..|||..| ||.||||
BL01788___bla 1609 AAAACCGGGACT----TCAGTTATCAACGGAGAACTTCATGCCGGCTGGT 1654
BSNT_00370___ 761 TTGTCGGATTCATCAAAACAGAGCATGGC------TCTTATGTCTTTGTC 804
|||||||||...|..|||| ||.| .|||.|.||||||
BL01788___bla 1655 TTGTCGGATATGTAGAAAC------TGCCGAAAATACTTTTTTCTTTG-- 1696
BSNT_00370___ 805 ACCAATGTCGATGATTCCGGCACAAAAGCCAAAAAC-----------ATC 843
.|||..|| |||| ||.|..|||||| |.|
BL01788___bla 1697 ----CTGTTCAT-ATTC-------AAGGTGAAAAACGGGCTGCCGGAAGC 1734
BSNT_00370___ 844 A------CCGTAGAT----------ATCCTG----AAAAAGTATGGCCTG 873
| ||| |||| |||.|| |||||| ||..|.
BL01788___bla 1735 ACTGCTGCCG-AGATTGCACTTTCCATCTTGGATAAAAAAG---GGATTT 1780
BSNT_00370___ 874 ATCACATCC---------TAA 885
||| ||||| |||
BL01788___bla 1781 ATC-CATCCGCTTCCCGATAA 1800
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