Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00579 and BL01771

See Amino acid alignment / Visit BSNT_00579 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:12
# Commandline: needle
#    -asequence dna-align/BSNT_00579___nasF.1.5803.seq
#    -bsequence dna-align/BL01771___nasF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00579___nasF-BL01771___nasF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00579___nasF-BL01771___nasF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00579___nasF
# 2: BL01771___nasF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1621
# Identity:     976/1621 (60.2%)
# Similarity:   976/1621 (60.2%)
# Gaps:         335/1621 (20.7%)
# Score: 2674.5
# 
#
#=======================================

BSNT_00579___      1 ATGAAGAATGGAATCGTTTATTTCGTGGGAGCCGGACCCGGCGACCCAGG     50
                     |||..||||||.|..||||||||.||.||.||||||||.|||||..||||
BL01771___nas      1 ATGGGGAATGGGAAAGTTTATTTTGTCGGGGCCGGACCGGGCGATTCAGG     50

BSNT_00579___     51 CCTGCTCACCATCAAAGGAA-AACAGGC-GCTCGAGGAAGCAGATGTCAT     98
                     ..||.||||..|.||||||| |||  || |.||||||..||.||||||||
BL01771___nas     51 ATTGATCACATTAAAAGGAAGAAC--GCTGATCGAGGCGGCGGATGTCAT     98

BSNT_00579___     99 TTTATATGACCGGCTCGCCAA--CCCGAAGCTGCTCGA------ATTTGC    140
                     .||.||||||.||||||.|||  ||||  ||||||.||      |...||
BL01771___nas     99 ATTGTATGACAGGCTCGTCAATTCCCG--GCTGCTTGAGCATGCAAAAGC    146

BSNT_00579___    141 ATCACCGGATTGCCAGTTTATTTATTGCGGAAAACTGCCAAACCGCCATT    190
                     ||||      |||.|.|||.|.||.|||||.||.||.||..|||||||||
BL01771___nas    147 ATCA------TGCGAATTTGTCTACTGCGGCAAGCTCCCGGACCGCCATT    190

BSNT_00579___    191 TTATGAAACAAAAAGAAATTAACGCCCTGCTGGTTGAAAAAGCATTAAAT    240
                     .|||||..||||..|||||.||.||.|||||..|||||||.|...|.||.
BL01771___nas    191 ATATGAGGCAAAGTGAAATCAATGCACTGCTCATTGAAAAGGGGCTGAAA    240

BSNT_00579___    241 GGGTTAACCGTCGTTCGCTTGAAGGGCGGAGATCCGAGCGTATTCGGCAG    290
                     ||..|.|..||.||.||..||||.||.|||||.||||||||.||.|||||
BL01771___nas    241 GGCCTCAAAGTGGTCCGGCTGAAAGGAGGAGACCCGAGCGTGTTTGGCAG    290

BSNT_00579___    291 GGTCGGCGAGGAAGCAGATGCTCTTCA-TGAGCACGGCATTCGCTATGAA    339
                     .|||||.||.|||||.|..|| |.||| .||.||||||||.|..||.||.
BL01771___nas    291 AGTCGGGGAAGAAGCGGCCGC-CGTCAGCGAACACGGCATCCCGTACGAG    339

BSNT_00579___    340 ATGGTGCCGGGAATCACCTCTGGAATTGCAGCGCCGCTATATGCGGGCAT    389
                     ||||||||.||.||.||.||.|||||.||.||.||.||.|||||.||..|
BL01771___nas    340 ATGGTGCCAGGCATTACATCGGGAATCGCCGCTCCTCTTTATGCCGGACT    389

BSNT_00579___    390 CCCCGTCACGCATCGGGATTTCGCATCGTCTTTTGCCATGATTACAGCGC    439
                     .||.||.||.||.||.||||||||.||.||.||||||.|..|.||.||.|
BL01771___nas    390 GCCTGTGACCCACCGCGATTTCGCTTCATCCTTTGCCGTTGTCACCGCCC    439

BSNT_00579___    440 ATGATAAATCATTAAAAGGCACGCCGAACCTTGACTGGGAAGGGCTTGCA    489
                     ||||||||||      .||||..|||.|..|..|.|||||||||||.|  
BL01771___nas    440 ATGATAAATC------GGGCAAACCGGAGATGAATTGGGAAGGGCTGG--    481

BSNT_00579___    490 CGAA--GCGTACAAACCCTTGTTTTTTACATGGGTGTCAAGAA-CTTGTC    536
                     |.||  ||||.||||||||.||.|||||||||||..||||.|| |||| .
BL01771___nas    482 CCAAGGGCGTCCAAACCCTCGTCTTTTACATGGGGATCAAAAACCTTG-G    530

BSNT_00579___    537 TTATATTTGCCAGCAGCTTATTTCATACGGGAAATCGCCTTCTGTCCCTG    586
                     ||||||.|||.|||||||.||...|.||||.||.||.||...|||.||.|
BL01771___nas    531 TTATATATGCGAGCAGCTGATGAAACACGGCAAGTCCCCCCTTGTTCCCG    580

BSNT_00579___    587 TCATTGTCATCCAATGGGGAACGTGGGGCCGCCAGCGGAGTGTGAAAGGA    636
                     ..||.|.||||||||||||.||.||||||||.|||||||||||.|||||.
BL01771___nas    581 CAATGGCCATCCAATGGGGCACATGGGGCCGGCAGCGGAGTGTTAAAGGG    630

BSNT_00579___    637 ACACTTG-AGAACATTCA-GCAAAAAGTGCAGGAGCACCAGATCACAAAC    684
                     ||| ||| ||||.| ||| |.|.|||.|....|||||.|||||||.|||.
BL01771___nas    631 ACA-TTGCAGAATA-TCAGGGAGAAAATAACCGAGCATCAGATCAAAAAT    678

BSNT_00579___    685 CCTGCCATTATTGTCATCGGAGACATCGTCAACTTTCAAACA-CACAGCT    733
                     ||.||.|||||.||||||||.|||||||| |.|.||||..|| .||||||
BL01771___nas    679 CCCGCGATTATCGTCATCGGCGACATCGT-ATCATTCAGGCAGAACAGCT    727

BSNT_00579___    734 GGTTTGAAAGCAAACCGCTCATCGGACGGCATTTGAT--GGTTGTGAC-T    780
                     |||||| |||.|||              ||.||||||  ||.|| .|| |
BL01771___nas    728 GGTTTG-AAGAAAA--------------GCCTTTGATCGGGCTG-AACAT    761

BSNT_00579___    781 CATGGC-------------GAAGATGAAGA----CCCGCTTGCAGACAAG    813
                     ||||||             |||||.|||.|    ||.|  ||.||.|  |
BL01771___nas    762 CATGGCAGTCAAAAGCTGTGAAGAAGAACAAATTCCAG--TGGAGGC--G    807

BSNT_00579___    814 CTGCGCGATTCCGGCGCCGATGTCATCGAGTGGCCGAAATGG----CGGA    859
                     ||.||.||....|||||.||.||..|.||.||||||||||||    ||| 
BL01771___nas    808 CTTCGTGAACAAGGCGCTGAAGTTGTGGAATGGCCGAAATGGAAATCGG-    856

BSNT_00579___    860 CCGAAAACATGCCAGTCAATGAAGAAATTCT---TCGAAAGATTGGCAT-    905
                     ||||||...||||.|   |.||.|.|.||.|   |||||    |.||.| 
BL01771___nas    857 CCGAAACGGTGCCTG---ACGATGCACTTTTAGGTCGAA----TCGCTTG    899

BSNT_00579___    906 CTTTGA-AGACGTTTTTTTCACATC------------GCGCCGGGTGGTT    942
                     .||||| || |.|..|.|||||.||            ||||.|       
BL01771___nas    900 TTTTGACAG-CCTGCTGTTCACCTCAAGTGCGTCACTGCGCAG-------    941

BSNT_00579___    943 TGTGAATTTTTCAGAGCACTGGCTT----CTCAGAAAATCGACATCCGCC    988
                          |||||||||    |.|||||    ||..|||.|||||..||.|..
BL01771___nas    942 -----ATTTTTCAG----CCGGCTTGCTGCTTTGAAGATCGATGTCAGGG    982

BSNT_00579___    989 A-----GCTGACAGCCAAAC---TGAGTGCAGCATCTGAACAAGCAAAGA   1030
                     |     ||.||..||...||   |.||..|||||  ||.|.|||||    
BL01771___nas    983 AAATGCGCGGAAGGCTTTACGCTTCAGATCAGCA--TGTAAAAGCA----   1026

BSNT_00579___   1031 CGGAGCTTGAAAAACGGGGGTTTCTTGTCACCGCCACTCAGCCTGATTC-   1079
                       |..||||||.|||||||.|||              ..|||||  ||| 
BL01771___nas   1027 --GCTCTTGAAGAACGGGGATTT--------------GAAGCCT--TTCT   1058

BSNT_00579___   1080 ----AGAGAAATGTC----------------TTGTTG-TCGGGAGCCGCC   1108
                         |..||||||.|                |||.|| ||||.|||||  
BL01771___nas   1059 GCAAACGGAAATGCCGGTCTCGGGCAGCTGTTTGCTGATCGGCAGCCG--   1106

BSNT_00579___   1109 ATGCAGTGGAATTCATGCAAAA------GCATGAATCC-TGTTCGTTTTA   1151
                            ||||..|.|||||||      ||   |.||| .||.||...||
BL01771___nas   1107 -------GGAAGCCGTGCAAAATTACCCGC---ACTCCGGGTGCGAGGTA   1146

BSNT_00579___   1152 T--ATCACTCATGAAAACGTCATAGATGACCGGTTCACCCACAT-GATTC   1198
                     |  ||.||.|||||.|..||.||.||...|||.||.|||    | |||  
BL01771___nas   1147 TTGATTACACATGACAGGGTGATCGACAGCCGCTTTACC----TCGAT--   1190

BSNT_00579___   1199 AGCGTACCATCA---GTGAA----------TCCCCGCTGCACAT--GGTC   1233
                            |||||   |.|||          |.||...|| |.||  .||.
BL01771___nas   1191 -------CATCAAACGGGAAATTGATGAGTTTCCTATTG-ATATAGTGTT   1232

BSNT_00579___   1234 ATTTGC---CCGAACA-------AGCTGTCCGTTCAGCAATTGATCAATG   1273
                     .|||.|   .||||||       ||||||.|||             ||..
BL01771___nas   1233 GTTTTCAAATCGAACATGCGTCGAGCTGTTCGT-------------AAAC   1269

BSNT_00579___   1274 GTGGCGAACAAATTGG-----CATTTCGCCGGAACCGTCAGCAAGCCGGC   1318
                     |.||||.|.|.|.|.|     |||    ||||||        ||..||||
BL01771___nas   1270 GAGGCGGAGACAGTCGGCCTCCAT----CCGGAA--------AAAACGGC   1307

BSNT_00579___   1319 CTCCTATCGTCTGTAT-AGGCG--ATGACTCAGCT------GCCGGGG--   1357
                     ..||   |||||   | |||||  .||.|||| ||      ||.||||  
BL01771___nas   1308 TGCC---CGTCT---TCAGGCGTTCTGCCTCA-CTGAAGAAGCGGGGGAG   1350

BSNT_00579___   1358 -----------CTTATGGATTCACAGC-CATCCAAGAACAGGATGA----   1391
                                |.||.||.||  |||| |.|.||.|.|..|.||||    
BL01771___nas   1351 AGAGCTGCAGCCGTAGGGTTT--CAGCGCGTTCATGCAGTGAATGATCGC   1398

BSNT_00579___   1392 -ATTGTTTGC----TTTCATCCAAA---ATCAAC----AAGCGGAAAAAA   1429
                      ||.|..|||    |.|||| ||||   ||||||    .|||.|||    
BL01771___nas   1399 GATCGCCTGCCGGATGTCAT-CAAAGAGATCAACCGAACAGCCGAA----   1443

BSNT_00579___   1430 AAC----TCCTTCACAGCTGA   1446
                            ||..|||.||||||
BL01771___nas   1444 ---TTTGTCTGTCAGAGCTGA   1461


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