Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00579 and BL01771
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_00579___nasF.1.5803.seq
# -bsequence dna-align/BL01771___nasF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00579___nasF-BL01771___nasF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00579___nasF-BL01771___nasF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00579___nasF
# 2: BL01771___nasF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1621
# Identity: 976/1621 (60.2%)
# Similarity: 976/1621 (60.2%)
# Gaps: 335/1621 (20.7%)
# Score: 2674.5
#
#
#=======================================
BSNT_00579___ 1 ATGAAGAATGGAATCGTTTATTTCGTGGGAGCCGGACCCGGCGACCCAGG 50
|||..||||||.|..||||||||.||.||.||||||||.|||||..||||
BL01771___nas 1 ATGGGGAATGGGAAAGTTTATTTTGTCGGGGCCGGACCGGGCGATTCAGG 50
BSNT_00579___ 51 CCTGCTCACCATCAAAGGAA-AACAGGC-GCTCGAGGAAGCAGATGTCAT 98
..||.||||..|.||||||| ||| || |.||||||..||.||||||||
BL01771___nas 51 ATTGATCACATTAAAAGGAAGAAC--GCTGATCGAGGCGGCGGATGTCAT 98
BSNT_00579___ 99 TTTATATGACCGGCTCGCCAA--CCCGAAGCTGCTCGA------ATTTGC 140
.||.||||||.||||||.||| |||| ||||||.|| |...||
BL01771___nas 99 ATTGTATGACAGGCTCGTCAATTCCCG--GCTGCTTGAGCATGCAAAAGC 146
BSNT_00579___ 141 ATCACCGGATTGCCAGTTTATTTATTGCGGAAAACTGCCAAACCGCCATT 190
|||| |||.|.|||.|.||.|||||.||.||.||..|||||||||
BL01771___nas 147 ATCA------TGCGAATTTGTCTACTGCGGCAAGCTCCCGGACCGCCATT 190
BSNT_00579___ 191 TTATGAAACAAAAAGAAATTAACGCCCTGCTGGTTGAAAAAGCATTAAAT 240
.|||||..||||..|||||.||.||.|||||..|||||||.|...|.||.
BL01771___nas 191 ATATGAGGCAAAGTGAAATCAATGCACTGCTCATTGAAAAGGGGCTGAAA 240
BSNT_00579___ 241 GGGTTAACCGTCGTTCGCTTGAAGGGCGGAGATCCGAGCGTATTCGGCAG 290
||..|.|..||.||.||..||||.||.|||||.||||||||.||.|||||
BL01771___nas 241 GGCCTCAAAGTGGTCCGGCTGAAAGGAGGAGACCCGAGCGTGTTTGGCAG 290
BSNT_00579___ 291 GGTCGGCGAGGAAGCAGATGCTCTTCA-TGAGCACGGCATTCGCTATGAA 339
.|||||.||.|||||.|..|| |.||| .||.||||||||.|..||.||.
BL01771___nas 291 AGTCGGGGAAGAAGCGGCCGC-CGTCAGCGAACACGGCATCCCGTACGAG 339
BSNT_00579___ 340 ATGGTGCCGGGAATCACCTCTGGAATTGCAGCGCCGCTATATGCGGGCAT 389
||||||||.||.||.||.||.|||||.||.||.||.||.|||||.||..|
BL01771___nas 340 ATGGTGCCAGGCATTACATCGGGAATCGCCGCTCCTCTTTATGCCGGACT 389
BSNT_00579___ 390 CCCCGTCACGCATCGGGATTTCGCATCGTCTTTTGCCATGATTACAGCGC 439
.||.||.||.||.||.||||||||.||.||.||||||.|..|.||.||.|
BL01771___nas 390 GCCTGTGACCCACCGCGATTTCGCTTCATCCTTTGCCGTTGTCACCGCCC 439
BSNT_00579___ 440 ATGATAAATCATTAAAAGGCACGCCGAACCTTGACTGGGAAGGGCTTGCA 489
|||||||||| .||||..|||.|..|..|.|||||||||||.|
BL01771___nas 440 ATGATAAATC------GGGCAAACCGGAGATGAATTGGGAAGGGCTGG-- 481
BSNT_00579___ 490 CGAA--GCGTACAAACCCTTGTTTTTTACATGGGTGTCAAGAA-CTTGTC 536
|.|| ||||.||||||||.||.|||||||||||..||||.|| |||| .
BL01771___nas 482 CCAAGGGCGTCCAAACCCTCGTCTTTTACATGGGGATCAAAAACCTTG-G 530
BSNT_00579___ 537 TTATATTTGCCAGCAGCTTATTTCATACGGGAAATCGCCTTCTGTCCCTG 586
||||||.|||.|||||||.||...|.||||.||.||.||...|||.||.|
BL01771___nas 531 TTATATATGCGAGCAGCTGATGAAACACGGCAAGTCCCCCCTTGTTCCCG 580
BSNT_00579___ 587 TCATTGTCATCCAATGGGGAACGTGGGGCCGCCAGCGGAGTGTGAAAGGA 636
..||.|.||||||||||||.||.||||||||.|||||||||||.|||||.
BL01771___nas 581 CAATGGCCATCCAATGGGGCACATGGGGCCGGCAGCGGAGTGTTAAAGGG 630
BSNT_00579___ 637 ACACTTG-AGAACATTCA-GCAAAAAGTGCAGGAGCACCAGATCACAAAC 684
||| ||| ||||.| ||| |.|.|||.|....|||||.|||||||.|||.
BL01771___nas 631 ACA-TTGCAGAATA-TCAGGGAGAAAATAACCGAGCATCAGATCAAAAAT 678
BSNT_00579___ 685 CCTGCCATTATTGTCATCGGAGACATCGTCAACTTTCAAACA-CACAGCT 733
||.||.|||||.||||||||.|||||||| |.|.||||..|| .||||||
BL01771___nas 679 CCCGCGATTATCGTCATCGGCGACATCGT-ATCATTCAGGCAGAACAGCT 727
BSNT_00579___ 734 GGTTTGAAAGCAAACCGCTCATCGGACGGCATTTGAT--GGTTGTGAC-T 780
|||||| |||.||| ||.|||||| ||.|| .|| |
BL01771___nas 728 GGTTTG-AAGAAAA--------------GCCTTTGATCGGGCTG-AACAT 761
BSNT_00579___ 781 CATGGC-------------GAAGATGAAGA----CCCGCTTGCAGACAAG 813
|||||| |||||.|||.| ||.| ||.||.| |
BL01771___nas 762 CATGGCAGTCAAAAGCTGTGAAGAAGAACAAATTCCAG--TGGAGGC--G 807
BSNT_00579___ 814 CTGCGCGATTCCGGCGCCGATGTCATCGAGTGGCCGAAATGG----CGGA 859
||.||.||....|||||.||.||..|.||.|||||||||||| |||
BL01771___nas 808 CTTCGTGAACAAGGCGCTGAAGTTGTGGAATGGCCGAAATGGAAATCGG- 856
BSNT_00579___ 860 CCGAAAACATGCCAGTCAATGAAGAAATTCT---TCGAAAGATTGGCAT- 905
||||||...||||.| |.||.|.|.||.| ||||| |.||.|
BL01771___nas 857 CCGAAACGGTGCCTG---ACGATGCACTTTTAGGTCGAA----TCGCTTG 899
BSNT_00579___ 906 CTTTGA-AGACGTTTTTTTCACATC------------GCGCCGGGTGGTT 942
.||||| || |.|..|.|||||.|| ||||.|
BL01771___nas 900 TTTTGACAG-CCTGCTGTTCACCTCAAGTGCGTCACTGCGCAG------- 941
BSNT_00579___ 943 TGTGAATTTTTCAGAGCACTGGCTT----CTCAGAAAATCGACATCCGCC 988
||||||||| |.||||| ||..|||.|||||..||.|..
BL01771___nas 942 -----ATTTTTCAG----CCGGCTTGCTGCTTTGAAGATCGATGTCAGGG 982
BSNT_00579___ 989 A-----GCTGACAGCCAAAC---TGAGTGCAGCATCTGAACAAGCAAAGA 1030
| ||.||..||...|| |.||..||||| ||.|.|||||
BL01771___nas 983 AAATGCGCGGAAGGCTTTACGCTTCAGATCAGCA--TGTAAAAGCA---- 1026
BSNT_00579___ 1031 CGGAGCTTGAAAAACGGGGGTTTCTTGTCACCGCCACTCAGCCTGATTC- 1079
|..||||||.|||||||.||| ..||||| |||
BL01771___nas 1027 --GCTCTTGAAGAACGGGGATTT--------------GAAGCCT--TTCT 1058
BSNT_00579___ 1080 ----AGAGAAATGTC----------------TTGTTG-TCGGGAGCCGCC 1108
|..||||||.| |||.|| ||||.|||||
BL01771___nas 1059 GCAAACGGAAATGCCGGTCTCGGGCAGCTGTTTGCTGATCGGCAGCCG-- 1106
BSNT_00579___ 1109 ATGCAGTGGAATTCATGCAAAA------GCATGAATCC-TGTTCGTTTTA 1151
||||..|.||||||| || |.||| .||.||...||
BL01771___nas 1107 -------GGAAGCCGTGCAAAATTACCCGC---ACTCCGGGTGCGAGGTA 1146
BSNT_00579___ 1152 T--ATCACTCATGAAAACGTCATAGATGACCGGTTCACCCACAT-GATTC 1198
| ||.||.|||||.|..||.||.||...|||.||.||| | |||
BL01771___nas 1147 TTGATTACACATGACAGGGTGATCGACAGCCGCTTTACC----TCGAT-- 1190
BSNT_00579___ 1199 AGCGTACCATCA---GTGAA----------TCCCCGCTGCACAT--GGTC 1233
||||| |.||| |.||...|| |.|| .||.
BL01771___nas 1191 -------CATCAAACGGGAAATTGATGAGTTTCCTATTG-ATATAGTGTT 1232
BSNT_00579___ 1234 ATTTGC---CCGAACA-------AGCTGTCCGTTCAGCAATTGATCAATG 1273
.|||.| .|||||| ||||||.||| ||..
BL01771___nas 1233 GTTTTCAAATCGAACATGCGTCGAGCTGTTCGT-------------AAAC 1269
BSNT_00579___ 1274 GTGGCGAACAAATTGG-----CATTTCGCCGGAACCGTCAGCAAGCCGGC 1318
|.||||.|.|.|.|.| ||| |||||| ||..||||
BL01771___nas 1270 GAGGCGGAGACAGTCGGCCTCCAT----CCGGAA--------AAAACGGC 1307
BSNT_00579___ 1319 CTCCTATCGTCTGTAT-AGGCG--ATGACTCAGCT------GCCGGGG-- 1357
..|| ||||| | ||||| .||.|||| || ||.||||
BL01771___nas 1308 TGCC---CGTCT---TCAGGCGTTCTGCCTCA-CTGAAGAAGCGGGGGAG 1350
BSNT_00579___ 1358 -----------CTTATGGATTCACAGC-CATCCAAGAACAGGATGA---- 1391
|.||.||.|| |||| |.|.||.|.|..|.||||
BL01771___nas 1351 AGAGCTGCAGCCGTAGGGTTT--CAGCGCGTTCATGCAGTGAATGATCGC 1398
BSNT_00579___ 1392 -ATTGTTTGC----TTTCATCCAAA---ATCAAC----AAGCGGAAAAAA 1429
||.|..||| |.|||| |||| |||||| .|||.|||
BL01771___nas 1399 GATCGCCTGCCGGATGTCAT-CAAAGAGATCAACCGAACAGCCGAA---- 1443
BSNT_00579___ 1430 AAC----TCCTTCACAGCTGA 1446
||..|||.||||||
BL01771___nas 1444 ---TTTGTCTGTCAGAGCTGA 1461
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