Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06239 and BL01754

See Amino acid alignment / Visit BSNT_06239 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:12
# Commandline: needle
#    -asequence dna-align/BSNT_06239.1.5803.seq
#    -bsequence dna-align/BL01754___mtaD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06239-BL01754___mtaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06239-BL01754___mtaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06239
# 2: BL01754___mtaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 835
# Identity:     461/835 (55.2%)
# Similarity:   461/835 (55.2%)
# Gaps:         206/835 (24.7%)
# Score: 1064.5
# 
#
#=======================================

BSNT_06239         1 ATGGTGAAATTA-ACAGTAAAAGAA--------CTATCCAATATTGCGAA     41
                     |||.|    .|| ||.|||||||||        ||        |.|||||
BL01754___mta      1 ATGCT----CTATACGGTAAAAGAAGTGGCTCGCT--------TGGCGAA     38

BSNT_06239        42 TGTCACAATCAAAACGCTTTATCATTACCACAAAATCGG-CT----TGCT     86
                     |.||||.|||||||||||.||.||.||.||.|||||||| ||    |||.
BL01754___mta     39 TATCACGATCAAAACGCTGTACCACTATCATAAAATCGGACTTTTATGCC     88

BSNT_06239        87 CC-CAAAGGAAATAAGCGAAGCCGGATATC----------GGTACTATGG    125
                     || |   |||..|.|..||.|||||.||||          ||||  |..|
BL01754___mta     89 CCGC---GGAGGTGACGGATGCCGGCTATCGCCTTTACGGGGTA--AAAG    133

BSNT_06239       126 TGCTGACGAACTAAAAAGACTGCAGGAAATCCTTTTTTACAAAGAATTAG    175
                     .||||  ||||      |.||||||.|.|||.|.|||||....||..|.|
BL01754___mta    134 AGCTG--GAAC------GGCTGCAGCACATCTTGTTTTATCGGGAGCTCG    175

BSNT_06239       176 ATATTCCTTTG-TCA--GAAATCA-----------------AAAGATTAT    205
                     |..||||   | |||  |.|||.|                 ||||.|.||
BL01754___mta    176 AATTTCC---GCTCAAGGCAATTAAGCAAATACTGGACGGCAAAGCTGAT    222

BSNT_06239       206 TAAATGAGGAT----GCTGA-AAGAACAAGTACATTAGAAAAACAAAAAA    250
                     ..|.|||.|||    .|||| .|||| |.||...||       ||     
BL01754___mta    223 CGACTGACGATTTTGTCTGAGCAGAA-ACGTCTTTT-------CA-----    259

BSNT_06239       251 AGCT----GTTTGAAAAGAAAATTGAAAAGTATCAGCGTCTCATTCAAAC    296
                       ||    |||||.|.||  ||||.||.||         ||.|||...||
BL01754___mta    260 --CTGCCCGTTTGGACAG--AATTAAACAG---------CTTATTTCTAC    296

BSNT_06239       297 AGTCAACACATCTTTAGAATACA------CGAGAAAAGGTGAAAACATGG    340
                     ..||    .||||.|.| ||.||      || |.|||||.|||...||||
BL01754___mta    297 GATC----GATCTCTCG-ATTCAGCAGGCCG-GGAAAGGAGAAGCAATGG    340

BSNT_06239       341 ATCA--TAAGGTAATGTTTAAAGGATTTGAAAGC-GCTGAAGAATGGAAA    387
                     ||||  .|||  .|||||.|||||.|||..|||| ||.| .||||||.|.
BL01754___mta    341 ATCAATCAAG--CATGTTCAAAGGGTTTTCAAGCAGCAG-GGAATGGGAG    387

BSNT_06239       388 CAATCTTTAGCAGAACAAAATGGGTATTTAAAAGA-GCGTTA------CG    430
                     .|..|..|.||.||||||||..|.|||||.||.|| ||| ||      ||
BL01754___mta    388 GATGCGCTCGCTGAACAAAACCGCTATTTGAAGGAGGCG-TATGATGTCG    436

BSNT_06239       431 ATTT--TGAATTGGATACACATACAATCAATGTCGATGAAATGAACAAAA    478
                     ||||  |||| .|||.| ||   ||.|||..|..||.||||||||..|||
BL01754___mta    437 ATTTGCTGAA-AGGAGA-AC---CAGTCATAGCGGAAGAAATGAATGAAA    481

BSNT_06239       479 TGGCAATAGAGGCTAAACATTTTCTTGATAGGATGGCTGATTTTTTAAGA    528
                     ..||...||||||....|.||||.|..||.|.|||||.||.....|.|||
BL01754___mta    482 AAGCTGAAGAGGCGGCCCGTTTTATGAATGGAATGGCCGAAGCGCTCAGA    531

BSNT_06239       529 AATGGTGTAACGTATCATGACCCTTCCGTGCAAGAGCATGTCATGAAT--    576
                     .|.||.||.|   |.||.|||         ||.||.||.||.|.||.|  
BL01754___mta    532 GACGGAGTCA---AACACGAC---------CATGAACAAGTGAAGACTGC    569

BSNT_06239       577 ----------CATCTTAAGTTCCTAAATCAGAACGGGCAT-----CCGAC    611
                               ||.||.|||||..|          |||.||     |||||
BL01754___mta    570 AATTAAACGGCACCTCAAGTTTTT----------GGGAATTACGCCCGAC    609

BSNT_06239       612 AAGTAAAGA-----AGACTACGTAAAACAAACACGTTTTTTTATGCAAGA    656
                            ||     ||.|        .||.|||||.||.|||||..||||
BL01754___mta    610 -------GATTTTCAGTC--------CCAGACACGCTTCTTTATCGAAGA    644

BSNT_06239       657 TGATTTCCATAGAGGAATGTTAGAAGAGCAGCAAGCCGGTTTATCTTATT    706
                     .|||||.|||.|.||||||.|.|||.|.||||||.|.||..|.||.||||
BL01754___mta    645 CGATTTTCATCGCGGAATGCTTGAAAATCAGCAAACAGGCCTCTCGTATT    694

BSNT_06239       707 ATTTGGTTGTCGTTGCAGAA-CACCTG-----TAG    735
                     ||||||.||..|.||||||| ||..||     ||.
BL01754___mta    695 ATTTGGCTGCTGCTGCAGAAGCATTTGCTTCATAA    729


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