Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00661 and BL01752
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:17
# Commandline: needle
# -asequence dna-align/BSNT_00661___gerKC.1.5803.seq
# -bsequence dna-align/BL01752___gerKC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00661___gerKC-BL01752___gerKC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00661___gerKC-BL01752___gerKC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00661___gerKC
# 2: BL01752___gerKC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1372
# Identity: 783/1372 (57.1%)
# Similarity: 783/1372 (57.1%)
# Gaps: 296/1372 (21.6%)
# Score: 1821.5
#
#
#=======================================
BSNT_00661___ 1 ATGGTACG------TAAATGTCTATTAGTCGTTCTCATGCTTTTGAG-CG 43
|||..||| |||| ||| ||.|||.|.||| | ||
BL01752___ger 1 ATGAAACGAATCGTTAAA-----ATT----GTGCTCCTACTT----GCCG 37
BSNT_00661___ 44 CCATTG---TGCTGCCCGGCTGCTGGGATAAGAGGGAGCTGACGGATCT- 89
|||||| |.||.|..||.|||||||||||.||.||||||||.|||||
BL01752___ger 38 CCATTGTCCTTCTTCAAGGGTGCTGGGATAAAAGAGAGCTGACAGATCTG 87
BSNT_00661___ 90 -TGCGATTATCTCGGCGATTGGCATCGATCGGACAAACG-------ACAG 131
||| |.|||.|.||.||.||.||.||| |||.| ||||
BL01752___ger 88 CTGC--TGATCACTGCCATCGGTATTGAT-----AAAGGTAAAGATACAG 130
BSNT_00661___ 132 CAACTACG-----TGCTGCATCTTCAAATTATCAATCCAGGGAATGTTGC 176
|.|||| .||| .|||.||..|||||||....|||||..|
BL01752___ger 131 --ATTACGAATTAAGCT-----ATCAGATCGTCAATCCGATCAATGTGAC 173
BSNT_00661___ 177 CGGCTACCTTCAGGGAGGAGGTGGTGGAGACAGGCCGCCTGTATCTGTCT 226
.|||..||||||.||.|||...||.||||||||||||||..|.||...||
BL01752___ger 174 AGGCGGCCTTCAAGGCGGACAGGGAGGAGACAGGCCGCCGATTTCAAGCT 223
BSNT_00661___ 227 ATTCGAT-TGA-AGGTAACAATTTAACGGA----AGCACTCAGAAAAGCC 270
|||| | ||| .||.||||||.|.||||| || ||||.|.||.
BL01752___ger 224 ATTC--TGTGACGGGCAACAATCTGACGGAAATGAG----CAGACATGCG 267
BSNT_00661___ 271 TC--CATAAAGGTATCACGGCGGCTTTATTTTGCCCATACCAATCTAGTC 318
|| ||.||| |.||.|||....||||||...||||.|||||.||.||.
BL01752___ger 268 TCAGCAAAAA--TGTCGCGGGAAATTTATTACTCCCACACCAACCTCGTG 315
BSNT_00661___ 319 GTGATCAATGAAAAGCTGGCAAAAGAAGAAGGTTTG-----GATTTTGTA 363
||..||.|||||||.||.||.||.||.|||||.||| .|||.||
BL01752___ger 316 GTTGTCGATGAAAAACTCGCCAAGGAGGAAGGCTTGATCAAAATTCTG-- 363
BSNT_00661___ 364 TTAGATAATCTTGACCGGGACACAGAATTTAGGTCAACAGCAAC-ATTCG 412
|||..|||||||||||||||.||.|||.|..||||.||.|| |||..
BL01752___ger 364 ---GATGTTCTTGACCGGGACACCGATTTTCGTACAACGGCGACGATTAT 410
BSNT_00661___ 413 TCGTT-----GCCCATAAAACAAAAGCAGAAAATATTGTGAAAATC---- 453
|..|| |.||| |||||| |||||.||| .|||
BL01752___ger 411 TATTTCCCGCGGCCA------AAAAGC-GAAAACATT-----CATCCGGA 448
BSNT_00661___ 454 --TTGACGCCAATTGATAAAATTCCATCAAATAAAGTCAATAAAACCTTG 501
.|||||||.||.|||||.||.||.|||||||||||.||.|||||..||
BL01752___ger 449 CGCTGACGCCGATCGATAAGATCCCGTCAAATAAAGTAAACAAAACGCTG 498
BSNT_00661___ 502 GATTTCACGGAGGCGCAATACGGG----CAGGTGGTCAATACCAATATTC 547
.|.||.||.||.|.|| ||..||| ||..|| ||.||.|...|.|
BL01752___ger 499 CAATTTACCGAAGAGC-ATTTGGGAGAACATATG---AAAACGAGCGTCC 544
BSNT_00661___ 548 AGGACGTTTTGAA------AACACTTGCCGCCAACACTATGGCACCGG-- 589
||||.||..|.|| |||| |.|..|.||| .|||||.|
BL01752___ger 545 AGGATGTCATCAAGTGCTTAACA-TCGAAGGCAA------AGCACCCGAT 587
BSNT_00661___ 590 ----TCATCCCCGGATTTATGATGATTGGTGACGATAAAAAAGGAGTCAG 635
||.||| ||||...|.|..||..||.|..||||.||.|..|.
BL01752___ger 588 TATTTCTTCC-----TTTAAAGTAACCGGAAACAAGGAAAAGGGTGAAAA 632
BSNT_00661___ 636 CATGGAAAACACGCAGGCGAC-TGACCCGAAAGCCATTCTTC-AGGCAGA 683
.|||||||||..||||.|.|| |..||.| ||.||.|..|| |.||.||
BL01752___ger 633 AATGGAAAACGTGCAGTCTACATCTCCTG--AGGCAATAGTCGAAGCGGA 680
BSNT_00661___ 684 TGGTCTGGCGGTTTTTGATAAGGCAGGATATTTAAAG------TATTGGC 727
.||..|||||||..||.|..||| .|||| .||||||
BL01752___ger 681 CGGCTTGGCGGTCATTAAAGAGG---------GAAAGCTCGTCAATTGGC 721
BSNT_00661___ 728 TGGAAGATGATG-AAAGCGTGGGGGC-AGTCTGGC---TTATG------- 765
|.|||| | |||.| ||| || .||| |||||
BL01752___ger 722 TTGAAG-----GCAAAAC-----GGCGAG--AGGCGTTTTATGGCTGCGC 759
BSNT_00661___ 766 AATAAGATCCAGCA-TACGTTGATT----AATGC---TGACTGGGGCAAG 807
|||||.|| ||||| .|||| ||| |||.| |||.| ||.|
BL01752___ger 760 AATAAAAT-CAGCAGAACGT--ATTTGACAATTCCAATGAAT----CATG 802
BSNT_00661___ 808 ACGAAGGATGCGGTCAGCTTGCAGGTTACCCATCAAGATACAAAGCTGGT 857
| ||..|||||.||||..||..|.||.|.||..|||.|.|||||..|.|.
BL01752___ger 803 A-GAGAGATGCCGTCACATTTGACGTCATCCGCCAAAAAACAAAAATCGG 851
BSNT_00661___ 858 A------CCGAAAATGCGGAACGGACGTCCGTACATCCATGTGAAAGTGT 901
| |.|||| ||||| ||..|..|.|| |.|
BL01752___ger 852 ATCTCACCTGAAA------AACGG---------CAAACCGGCGA---TTT 883
BSNT_00661___ 902 CGGTTGAAGGTATTATTGATG-------CTGTCAAATACCCTTTCCAAT- 943
|||||||.|....|||.||.| |.|..|||.|.|..|.||.||
BL01752___ger 884 CGGTTGACGTGGCTATGGAAGGGGACATCGGCGAAACAACTGTGCCGATT 933
BSNT_00661___ 944 ----TGTCTGATCCCAAGGTGCTGGCCGCTATTGAAA--AAGCGCTCAAC 987
||..||||||.||.||||||..||.|||.|||| |||....||
BL01752___ger 934 CACCTGGATGATCCAAAAGTGCTGAGCGATATCGAAAGGAAGGTGGCA-- 981
BSNT_00661___ 988 AAAGAGCTTGAAAAGGAAATTAGC--CATACTG--TGAAAAAGATTAAGA 1033
||.||.||..||||.||| |.|| .|||| | |||.|..| |||||.
BL01752___ger 982 AAGGAACTGAAAAATGAA--TTGCAGAATAC-GATTGACATTG-TTAAGC 1027
BSNT_00661___ 1034 AGAATAAAATAGATTTT------ATCGGTTTTGGTGACACGATATATAGA 1077
.|||.||.|..|||.|| .|||||..||.|| |.|||.|.
BL01752___ger 1028 GGAACAAGACGGATGTTCTGCAATTCGGTGATGTTG------TGTATCGC 1071
BSNT_00661___ 1078 AAGTATCCGGAGCAGTG-GGAGAAA-ATGAAGGACACATGGGACAAAGAA 1125
|...|.||.|| |||| |||.||| |||.|||....||||..|||....
BL01752___ger 1072 ACCCACCCCGA--AGTGTGGAAAAAGATGGAGGGTGAATGGAGCAATCGG 1119
BSNT_00661___ 1126 TATTTGCCCGA-ACTGCC-----CAT--CGATGTGAAGGCCGAGACGTAT 1167
|||||.||.|| ||.|.| ||| || ||.||.|| |.|||||
BL01752___ger 1120 TATTTTCCTGACACAGACGTCGACATTACG--GTTAATGC--ATACGTA- 1164
BSNT_00661___ 1168 ATCAGAAGGACGGGATTGCGAAACGATCCGATCAAACACCAGTTTAAA-- 1215
.||||.||.||.||..|||||.||||| |.||.|||.||
BL01752___ger 1165 ---CGAAGAACAGGTTTAAGAAACAATCCG-------AACATTTTGAATC 1204
BSNT_00661___ 1216 --GATGATTAG----------- 1224
.|||| ||
BL01752___ger 1205 ATCATGA--AGGGCGTTCTTGA 1224
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