Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06184 and BL01738
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:09
# Commandline: needle
# -asequence dna-align/BSNT_06184___rocE.1.5803.seq
# -bsequence dna-align/BL01738___rocE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06184___rocE-BL01738___rocE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06184___rocE-BL01738___rocE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06184___rocE
# 2: BL01738___rocE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1500
# Identity: 1026/1500 (68.4%)
# Similarity: 1026/1500 (68.4%)
# Gaps: 150/1500 (10.0%)
# Score: 3378.5
#
#
#=======================================
BSNT_06184___ 1 GTGAATAC----AAAC------CAAGATA-ACGGAAATCAGCTCCAGCGG 39
.||||| | |||| |||.||| ||.|||| ||.
BL01738___roc 1 TTGAAT-CATGAAAACCGTGAACAATATACACTGAAA----------CGA 39
BSNT_06184___ 40 ACAATGAAATCACGCCACTTGTTCATGATTTCATTGGGCGGAGTGATCGG 89
||.||||||||.|||||.|||||.|||||.||..|.|||||.||.|||||
BL01738___roc 40 ACGATGAAATCCCGCCATTTGTTTATGATCTCGCTTGGCGGCGTCATCGG 89
BSNT_06184___ 90 AACCGGTTTCTTCCTTGGAACCGGGTTTACCATTAACCAAGCGGGACCGC 139
||||||.||.||.||.|||||.||.|.|||.|||||..||||.||||||.
BL01738___roc 90 AACCGGCTTTTTTCTCGGAACAGGTTATACGATTAATGAAGCCGGACCGA 139
BSNT_06184___ 140 TCGGCGCGGTTCTGTCCTATTTAGTGGGCGGCTTTATCATGTTTTTGACG 189
||||||||.||||.||||||||||.||||||..|.|||||||.|||.|||
BL01738___roc 140 TCGGCGCGATTCTTTCCTATTTAGCGGGCGGAATGATCATGTATTTTACG 189
BSNT_06184___ 190 ATGCTCTGCTTAGGAGAGCTGGCAGTCGCCTTTCCTGTGTCAGGGTCCTT 239
|||||||||.|.||.|||||.||.||.||..|.||.||.|||||.||.||
BL01738___roc 190 ATGCTCTGCCTTGGGGAGCTCGCTGTGGCAATGCCGGTTTCAGGCTCTTT 239
BSNT_06184___ 240 CCAGACCTATGCGACAAAATTTATCAGCCCGGCCTTC-GGGTTTGCGTTC 288
.|||||.||.|||||||||||||||.|.||.| ||.| ||||||||..||
BL01738___roc 240 TCAGACGTACGCGACAAAATTTATCGGGCCTG-CTACAGGGTTTGCCGTC 288
BSNT_06184___ 289 GGCTGGCTGTACTGGCTCGGCTGGGCGGTTACATG-CGCCATTGAATTCT 337
||||||.|.||.||||||||||||.||||||| || .||..|.|||||.|
BL01738___roc 289 GGCTGGATCTATTGGCTCGGCTGGTCGGTTAC-TGTTGCTTTGGAATTTT 337
BSNT_06184___ 338 TATCAGCGGGGCAGCTGATGCAACGATGGTTTCCGCATATAGACGTGTGG 387
|.||||||||||||||||||.||.||||||||||..||.|.|.|||.|||
BL01738___roc 338 TGTCAGCGGGGCAGCTGATGAAAAGATGGTTTCCCGATGTCGGCGTCTGG 387
BSNT_06184___ 388 ATCTGGTGTCTGGTCTTTGCGGCACTGATGTTTATTT---TAAATGCGAT 434
||.|||||..||.|.||.|.| |||.||.||.||| |.|||||..|
BL01738___roc 388 ATATGGTGCTTGATTTTCGGG---CTGCTGCTTTTTTCACTCAATGCTTT 434
BSNT_06184___ 435 CACCACAAAAGCCTTTGCGGAATCAGAATTCTGGTTTTCAGGCATTAAAA 484
..|..||||.||.||.|.||||||.|||||.|||.|.||.|||||.||||
BL01738___roc 435 ATCGGCAAAGGCTTTCGGGGAATCGGAATTTTGGCTGTCCGGCATCAAAA 484
BSNT_06184___ 485 TTTTGATTATCCTTTTATTTATTATTCTCGGCGGAGCTGCCATGTTTGGC 534
||.|..|.||.|||.|.|||||||||||||||||||..||.|||||.||.
BL01738___roc 485 TTATCGTCATTCTTCTGTTTATTATTCTCGGCGGAGGCGCGATGTTCGGA 534
BSNT_06184___ 535 CTGATTGATCTGAAGGGCGGAGAGCAGGCGCCGTT-TTTGACACATTTTT 583
||.||.||..||||.|.||||.||...||.||||| |||..|| ||.|..
BL01738___roc 535 CTCATCGACTTGAAAGACGGACAGGCTGCACCGTTCTTTTCCA-ATCTGA 583
BSNT_06184___ 584 ATGAAGACGGGTTATTTCCGAACGGCATAAAG-GCAATGCTGATTACGAT 632
.||.||||||..|.|||||.||||| ||...| ||.||..|.||.|||||
BL01738___roc 584 TTGGAGACGGAATTTTTCCAAACGG-ATTCGGCGCGATCTTTATCACGAT 632
BSNT_06184___ 633 GATTACCGTGAACTTTGCGTTTCAGGGGACTGAGCTGATCGGGGTTGCAG 682
|||.|||||.||||||||.|||||||||||.||||||||||||.|.||.|
BL01738___roc 633 GATCACCGTCAACTTTGCCTTTCAGGGGACGGAGCTGATCGGGATCGCGG 682
BSNT_06184___ 683 CCGGAGAAAGTGAAGACCCTGAAAAAACGATTCCACGGTCAATCAAACAG 732
|.||.|||||.|||.|.||.|||||||||.|.||.||.||.|||||||||
BL01738___roc 683 CGGGGGAAAGCGAAAATCCGGAAAAAACGGTGCCCCGCTCCATCAAACAG 732
BSNT_06184___ 733 ACAGTATGGAGAACGCTTGTCTTCTTTGTGCTTTCAATCATTGTCATTGC 782
||.||.|||.|.||.||.||.||.||.|..||.||..|..|||| |.||.
BL01738___roc 733 ACGGTCTGGCGGACACTGGTGTTTTTCGGCCTGTCCGTATTTGT-ACTGG 781
BSNT_06184___ 783 CGGCA-TGATTCCGTGGAAACAGGCGGGTGTCGTGGAAAGTCCATTTGTT 831
|||.| |||||||.|||.||.|.|||||.||.||.||||||||.||.|||
BL01738___roc 782 CGGGATTGATTCCATGGGAAAAAGCGGGGGTTGTTGAAAGTCCGTTCGTT 831
BSNT_06184___ 832 GCCGTATTTGAGCAAATCGGGATCCCATATGCAGCTGATATCATGAACTT 881
|..||||||||.||||||||.||.||.|||||.||.|||.|.||||||||
BL01738___roc 832 GTGGTATTTGAACAAATCGGCATTCCGTATGCCGCCGATCTGATGAACTT 881
BSNT_06184___ 882 TGTTATTTTAATCGCGCTGTTATCTGTTGCGAATTCAGGTTTATACGCAT 931
||||||||||||.||..|||||||.||.||||||||.||.||.|||||||
BL01738___roc 882 TGTTATTTTAATTGCTTTGTTATCGGTGGCGAATTCGGGCTTGTACGCAT 931
BSNT_06184___ 932 CGACACGTATTCTGTACGCGATGGCGAATGAAGGA---------CAGGCC 972
||||..|.||.||.||..|..|||||||.||.||| |||||.
BL01738___roc 932 CGACGAGGATGCTTTATTCCCTGGCGAAAGAGGGAATGGCCGCTCAGGCT 981
BSNT_06184___ 973 TTCAAAGCGCTCGGAAAAACAAATCAGCGCGGTGTGCCGATGTACTCG-- 1020
|| |||| |||...||.||| .|.|||.|.||||||.|..||
BL01738___roc 982 TT--AAGC---CGGGTCAATAAA----AGAGGTATTCCGATGAATGCGCT 1022
BSNT_06184___ 1021 -TTAATCGTAACGATGGCTGTGGCCTGCCTATCACT--TCTGACAA---- 1063
|..||| |||.|.|.|.|.||..|..|.||.|| ||| |||
BL01738___roc 1023 TTGGATC---ACGCTCGGTTTTGCGGGTTTGTCCCTCATCT--CAAGCGT 1067
BSNT_06184___ 1064 AGTTTGCGCAGGCTGAAA--CTGTATATATGGTACTGTTATCTTTGGCGG 1111
||| |||| ||.|||| ||.||.||.||| ||.||.|||.|.||.|
BL01738___roc 1068 AGT---CGCA-GCAGAAACGCTCTACATTTGG--CTTTTGTCTCTAGCCG 1111
BSNT_06184___ 1112 GTATGAGCGCGCAGGTCGGCTGGATTACGATCTCGCTTTCCCAAATCATG 1161
||.|.||||||||.|||||||||||.|||||..||.|.||.||..|..|.
BL01738___roc 1112 GTTTAAGCGCGCAAGTCGGCTGGATCACGATTACGGTATCACAGCTGCTA 1161
BSNT_06184___ 1162 TTT---AGACGCAAATATATCCGCGAAGGCGGGAAGATAGAAGATTTGAA 1208
||| ||||| ||||.||...||||||||.|||.|.|||||.||.||
BL01738___roc 1162 TTTCGCAGACG---ATATGTCAAAGAAGGCGGAAAGGTTGAAGACTTAAA 1208
BSNT_06184___ 1209 ATTTAAAACACCGCTGTACCCGGTGCTT--CCGCTGATCGGCCTAACATT 1256
|||||||||.||.||.||.|| |..|| |||||||..||..|.|..||
BL01738___roc 1209 ATTTAAAACGCCTCTTTATCC--TTATTTGCCGCTGACGGGATTTATTTT 1256
BSNT_06184___ 1257 AAATACGGTCGTGCTCATCAGTCTTGCATTTGATCCGGAGCAGCGTATCG 1306
|||.|..|.|||.||..|.||.||.||.||||||.|.||||||.|.||.|
BL01738___roc 1257 AAACAGCGCCGTCCTTGTGAGCCTCGCTTTTGATTCAGAGCAGAGGATGG 1306
BSNT_06184___ 1307 CGCTGTATTGCGGCGTACCGTTTATGGTCAT------TTGCTACATCATT 1350
|..||||.|||||..| ||||| |||| .||||||.|..||
BL01738___roc 1307 CATTGTACTGCGGGAT----TTTAT--TCATGTCGGCCTGCTACTTTGTT 1350
BSNT_06184___ 1351 TATCATGTCGTCATTAAAAAACGCCAGCAGGC----GAATCGTC----AG 1392
|||||.||..|..|.||||||||| ||||| | ||||.| ||
BL01738___roc 1351 TATCACGTGTTTGTGAAAAAACGC---CAGGCTCTTG-ATCGACAAGAAG 1396
BSNT_06184___ 1393 CTA-GAGCTTTAA------------------------------------- 1404
|.| ||.||.|.|
BL01738___roc 1397 CAATGATCTATCAAAACAAAACAAACGATGAGGTGGTTATTGATGAATAA 1446
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