Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00605 and BL01717
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_00605.1.5803.seq
# -bsequence dna-align/BL01717.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00605-BL01717.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00605-BL01717.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00605
# 2: BL01717
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 777
# Identity: 421/777 (54.2%)
# Similarity: 421/777 (54.2%)
# Gaps: 207/777 (26.6%)
# Score: 1318.5
#
#
#=======================================
BSNT_00605 1 ATGTTTTTAAAAAAGGTTACTCTTCTTCGAGATAAGATTTTGGACTT-TG 49
|||||||||||||||.|.|||.|.|||||.|| |.||.||....||| ||
BL01717 1 ATGTTTTTAAAAAAGCTGACTTTACTTCGGGA-AGGAGTTCCTTCTTATG 49
BSNT_00605 50 ACAGATTTCCTTTTACTATCCCGGCTATAAGTCAA---TTAAA-----TG 91
..|.||.|||.|||.|.||.||.||||| |||| ||||| ||
BL01717 50 CAAAATATCCATTTTCAATTCCTGCTAT---TCAACATTTAAAAGAACTG 96
BSNT_00605 92 ACATCTTATTTACTAGCCAA------GTGACTTTTTTTGTGGGGGAAAAT 135
||.|.| ||| ||.||.||||||||.||||||||.
BL01717 97 ACGTTT-----------CAAAAAAACGTAACATTTTTTGTCGGGGAAAAC 135
BSNT_00605 136 GGATCTGGAAAATCTACTTTGCTTGAAGCGATAGCAGATAAGTGTGAATT 185
|||||.||.|||||.||..||||||||||.||.||||||||.||.|||||
BL01717 136 GGATCGGGCAAATCGACGCTGCTTGAAGCAATCGCAGATAAATGCGAATT 185
BSNT_00605 186 CAATACAGCGGGCGGAAGCCGAAATAATGTCTATGAA--TTACGGGAGTC 233
.||.|||||.|||||..|..|||||||....|||||| .||||| .||
BL01717 186 TAACACAGCCGGCGGGGGAAGAAATAACACATATGAAGTGTACGG--CTC 233
BSNT_00605 234 AGATTCCCATTTAGGAGATTATATACGTTTATCTTGGCTTCCAAAGGTAA 283
.|..||...|.|.|||||.|||||..|.||.||.||||||||.||.||||
BL01717 234 CGGATCGGCTCTTGGAGACTATATCAGATTGTCGTGGCTTCCCAAAGTAA 283
BSNT_00605 284 CAAATGGCTTCTTCTTAAGGGCTGAATCGTTTTATCATCTTTCTCTTCAT 333
||||.|||||.||..|..|.||||||||.||.||||||.||.|...||||
BL01717 284 CAAACGGCTTTTTTCTGCGCGCTGAATCTTTCTATCATTTTGCCACTCAT 333
BSNT_00605 334 CTGGATGAGATGGA----ACTAGATGCTCCTCAGCCATACCGTTC----C 375
.|.|||||..|||| ||..||| ||| |
BL01717 334 ATTGATGAAGTGGATATCACGGGAT-----------------TTCGAAGC 366
BSNT_00605 376 TATGGAGGGAGGCCGCTACACAATCAATCACATGGAGAGTCCTTTATGTC 425
||.|||||.||..|.||.|||.|.||.||.||.||.||.||.|||.|.||
BL01717 367 TACGGAGGCAGATCTCTTCACGAGCAGTCGCACGGCGAATCTTTTTTATC 416
BSNT_00605 426 TCTATTCCGTCATCGTTTTAAAGAGAAAGCGATTTACCTTTTAGATGAGC 475
.||.|||...||||||||||||||.||.|.||||||.|||.|||||||||
BL01717 417 GCTTTTCAAGCATCGTTTTAAAGAAAAGGGGATTTATCTTCTAGATGAGC 466
BSNT_00605 476 CAGAAGCAGCACTT-TCTCCAGCTAGACAATTAGCTTTTTTGAGAGTTAT 524
|.|||||.|| ||| |||||.||.|||||..|.||.||.||||.|.|.||
BL01717 467 CTGAAGCGGC-CTTATCTCCGGCAAGACAGCTGGCATTCTTGAAAATCAT 515
BSNT_00605 525 ACATGATTTGGTGAAGGGCGGAATTGGTGAAGGGCGGAAATGTACAGATG 574
.|||||||| |.||.||| .|.|..|.|..|||.|.
BL01717 516 TCATGATTT-------GACGAAAT---------CCAGCCAGGCTCAGTTT 549
BSNT_00605 575 ATCATTGCGACTCACTCCCCAATCCTACTGGGCTATCCCAATGCTAA--- 621
|||||.||..|.||||||||.||..||.|.||.|||||..|.||..|
BL01717 550 ATCATCGCTTCCCACTCCCCCATTTTATTAGGGTATCCGGAAGCCGAAAT 599
BSNT_00605 621 -------------------------------------------------- 621
BL01717 600 CTTTAGTTTTGATGGTGAACAAATCGCTGAAGTGAACTATGAGGATACGG 649
BSNT_00605 621 -------------------------------------------------- 621
BL01717 650 ATCATTACACTTTAACCAAGTATTTTCTTCAGCACCGGGAAAAGCTTTTG 699
BSNT_00605 621 --------------------------- 621
BL01717 700 GCGGAGCTGTTTTTAGATGACGTTTGA 726
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