Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00564 and BL01713

See Amino acid alignment / Visit BSNT_00564 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:11
# Commandline: needle
#    -asequence dna-align/BSNT_00564___cah.1.5803.seq
#    -bsequence dna-align/BL01713___cah.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00564___cah-BL01713___cah.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00564___cah-BL01713___cah.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00564___cah
# 2: BL01713___cah
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 980
# Identity:     700/980 (71.4%)
# Similarity:   700/980 (71.4%)
# Gaps:          46/980 ( 4.7%)
# Score: 2389.0
# 
#
#=======================================

BSNT_00564___      1 ATGCAAC-----TATTCGATCTGCCGCTCGACCAATTGC--AAACA-TAT     42
                     |||||.|     |||  |||.|||||||.||.||   ||  .|.|| |||
BL01713___cah      1 ATGCAGCAGCCTTAT--GATATGCCGCTTGAACA---GCTTTATCAGTAT     45

BSNT_00564___     43 AAGCCTGAAAAAACAGCACCGAAAGATTTTTCTGAGTTTTGGAAATTGTC     92
                     ||.||||||...||.||||||...||||||...|||||.|||||....||
BL01713___cah     46 AAACCTGAACGGACGGCACCGGCCGATTTTAAAGAGTTCTGGAAGGGTTC     95

BSNT_00564___     93 TTTAGAGGAACTTGCAAAAGTCCAAGCAGAACCTGATTTACAGCCGGTTG    142
                     .||.||||||.|.|||||.|...||||.|.|||..|..|..|.|||..||
BL01713___cah     96 ATTGGAGGAATTGGCAAATGAAAAAGCGGGACCGCAGCTTGAACCGCATG    145

BSNT_00564___    143 ACTATCCTGCTGACGGAGTAAAAGTGTACCGTCTCACATATAAAAGCTTC    192
                     |.|||||.||||||||.||||||||.|||.|.||.|||||.|.||||.||
BL01713___cah    146 AATATCCGGCTGACGGGGTAAAAGTCTACTGGCTTACATACAGAAGCATC    195

BSNT_00564___    193 GGAAACGCCCGCATTACCGGATGGTACGCAGTGCCTGACAAGGAAGGCCC    242
                     ||....||.||.||||..||.|||||||||||.||.|||....||||.||
BL01713___cah    196 GGGGGAGCGCGAATTAAAGGCTGGTACGCAGTACCCGACCGCCAAGGGCC    245

BSNT_00564___    243 GCATCCGGCGATGGTGAAATATCATGGCTACAATGCAAGCTATGATGGTG    292
                     .|||||.|||||.||.|||||.||.|||||.||.|||||||||||.||.|
BL01713___cah    246 TCATCCTGCGATCGTCAAATACCACGGCTATAACGCAAGCTATGACGGAG    295

BSNT_00564___    293 AGATTCATGAAATGGTAAACTGGGCACTCCATGGCTACGCCGCATTCGGC    342
                     |.|||||.||.||.||.||.|||||.||.||.|||||.||.||||||||.
BL01713___cah    296 ACATTCACGATATTGTCAATTGGGCTCTTCACGGCTATGCGGCATTCGGT    345

BSNT_00564___    343 ATGCTTGTCCGCGGCCAGCAGAGCAGCGAGGATAC-GAGTATTTCACCGC    391
                     |||||.||||||||.|||.|.|||||.||.||||| ||| ||.||.|..|
BL01713___cah    346 ATGCTGGTCCGCGGACAGAACAGCAGTGAAGATACAGAG-ATCTCTCATC    394

BSNT_00564___    392 ACGGTCACGCTTTG-----GGCTGGATGACGAAAGGAATTCTTGAT---A    433
                     ||||.||     ||     |||||||||||.||||||||.||.|||   |
BL01713___cah    395 ACGGACA-----TGTACCCGGCTGGATGACAAAAGGAATCCTCGATCCGA    439

BSNT_00564___    434 AAGATACATACTATTACCGCGGTGTTTATTTGGACGCCGTCCGCGCGCTT    483
                     ||   |||||.||.|||.|.||.||.|||||.||.|||||.||.||..|.
BL01713___cah    440 AA---ACATATTACTACAGAGGGGTCTATTTAGATGCCGTACGAGCAGTC    486

BSNT_00564___    484 GAGGTCATCAGCAGTTTCGACGAGGTTGATGAAACAAGGATCGGTGTGAC    533
                     ||.||..|||||.||||.|..||.||.|||||||...|||||||.||||.
BL01713___cah    487 GAAGTGGTCAGCGGTTTTGCTGAAGTCGATGAAAAGCGGATCGGGGTGAT    536

BSNT_00564___    534 AGGAGGAAGCCAAGGCGGAGGTTTAACCATTGCCGCAGCAGCGCTGTCAG    583
                     .||.|.|||||||||.||.||..|..||.|.||.|...|.||||||||.|
BL01713___cah    537 CGGGGCAAGCCAAGGAGGCGGGCTGGCCGTCGCGGTTTCGGCGCTGTCCG    586

BSNT_00564___    584 ACATTCCAAAAGCCGCGGTTGCCGATTATCCTTATTTAAGCAACTTCGAA    633
                     |.|||||||||||.||.||..|.||.||.||||||||||||||.||..||
BL01713___cah    587 ATATTCCAAAAGCAGCCGTGTCAGAATACCCTTATTTAAGCAATTTTCAA    636

BSNT_00564___    634 CGGGCCATTGATGTGGCGCTTGAACAGCCGTACCTTGAAATCAATTCCTT    683
                     ||.||.||.|||...|||.|.||.|||||.||.||.||||||||.|||||
BL01713___cah    637 CGAGCGATCGATACAGCGATCGACCAGCCATATCTCGAAATCAACTCCTT    686

BSNT_00564___    684 CTTCAGAAGAAATGGCAGCCCGGAAACAGAAGTGCAGGCG---ATGAAGA    730
                     .|||||||||||...|||.|||||.|..||   |||||||   |||.|.|
BL01713___cah    687 TTTCAGAAGAAACACCAGTCCGGATATTGA---GCAGGCGGCCATGCATA    733

BSNT_00564___    731 CACTTTCATATTTCGATATTATGAATCTCGCTGACCGA---GTGAAGGTG    777
                     |.||.||.|||||||||.|.|||||.||   ||.||.|   ||.||.|.|
BL01713___cah    734 CCCTGTCTTATTTCGATGTCATGAACCT---TGCCCAATTGGTCAAAGCG    780

BSNT_00564___    778 CCTGTCCTGATGTCAATCGGCCTGATTGACAAGGTCACGCCGCCATCCAC    827
                     .|.||.||.|||||.|||||.|||.||||||...||||.|||||||||||
BL01713___cah    781 ACCGTACTCATGTCGATCGGACTGGTTGACACCATCACTCCGCCATCCAC    830

BSNT_00564___    828 CGTGTTTGCCGCCTACAATCATTTGGAAACAGAGAAAGAGCTGAAGGTGT    877
                     |||.|||||.||.||||||||.||||||||.||.|||||..|.||.||||
BL01713___cah    831 CGTCTTTGCGGCTTACAATCACTTGGAAACGGATAAAGAAATAAAAGTGT    880

BSNT_00564___    878 ACCGCTACTTCGGACATGAGTATATCCCTGCTTTTCAAACGGAAAAACTT    927
                     ||||.||.||.|||||.||.||.|||||..|.||.|||||.|||||.||.
BL01713___cah    881 ACCGTTATTTTGGACACGAATACATCCCGCCGTTCCAAACCGAAAAGCTG    930

BSNT_00564___    928 GCTTTTTTTAAGCAGCATCTTAAAGGCTGA    957
                     ||.|||.|.|...|||||||.|||   |.|
BL01713___cah    931 GCGTTTCTGAGAAAGCATCTGAAA---TAA    957


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00564 and BL01713

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
