Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00572 and BL01712
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_00572___ycgP.1.5803.seq
# -bsequence dna-align/BL01712___ycgP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00572___ycgP-BL01712___ycgP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00572___ycgP-BL01712___ycgP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00572___ycgP
# 2: BL01712___ycgP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1311
# Identity: 879/1311 (67.0%)
# Similarity: 879/1311 (67.0%)
# Gaps: 141/1311 (10.8%)
# Score: 2733.0
#
#
#=======================================
BSNT_00572___ 1 ATGGAAGAGCTTTTAGAGAGAGTTTTTTCATTTTCAGATGTTGATAAGCT 50
|||||||||||.|||||...||||.||||..|||||.|..||.||.||.|
BL01712___ycg 1 ATGGAAGAGCTATTAGAACAAGTTGTTTCTCTTTCAAACATTAATGAGAT 50
BSNT_00572___ 51 GATTGATTTTATTAGCTATGAACTGCAAAAGCCAGTGATACTGGAAAGCG 100
.|||||.|||||.|||...||.|||.|||||||.||.|||||||||||||
BL01712___ycg 51 CATTGACTTTATCAGCGGGGAGCTGAAAAAGCCGGTCATACTGGAAAGCG 100
BSNT_00572___ 101 CGGATTTCTTTTTGCTAGCCTATAATTCTTACTATATTAACCATTTTGAT 150
|.|||||.||.||..||||.||.||.||.||.||||||||||||||||||
BL01712___ycg 101 CAGATTTTTTCTTATTAGCTTACAACTCCTATTATATTAACCATTTTGAT 150
BSNT_00572___ 151 TCTGCCAACCAGCAGACTATTTTTTCGAAAAAGTGTCCGGTCCAGATTTT 200
.|.||.||||||||.||.|||||.||.|||||.||||||.|.|.|||.||
BL01712___ycg 151 GCAGCAAACCAGCAAACGATTTTCTCCAAAAAATGTCCGCTGCCGATCTT 200
BSNT_00572___ 201 TGAGAGGTT--TCTGAAGGACGGAATTATTGAAAAATTGAAAACAGAGCC 248
|||.|.||| || ||| ||.||.||||||||..|||||||||| ||..|
BL01712___ycg 201 TGAAAAGTTCGTC-GAA-GAAGGCATTATTGATCAATTGAAAAC-GATTC 247
BSNT_00572___ 249 TGA-GCCTTTTCGCGTCAATAAAATTGAAAGCATTGGGTTAAACCAGAGG 297
.|| .||||||||.||.||..|.||||||...||.||.|||||||||.||
BL01712___ycg 248 CGACTCCTTTTCGGGTAAAACAGATTGAAGAAATCGGCTTAAACCAGCGG 297
BSNT_00572___ 298 GTGGTCGTGAGTGCAAAGCACAAAGGGGAAGTCATGGGCTACATCTGGAT 347
||.|||||.||.||.|||||.||||..|||.|.||||||||.||||||.|
BL01712___ycg 298 GTTGTCGTCAGCGCCAAGCATAAAGACGAAATAATGGGCTATATCTGGGT 347
BSNT_00572___ 348 TCAGGAGCTGGACCAAAATCTGACGGATGAAGAGCTCGACTTTTTGTA-C 396
.||||||.|.||..|.||.|||.|.|||||||||||.||.||.||.|| |
BL01712___ycg 348 GCAGGAGATTGAAGACAACCTGTCTGATGAAGAGCTTGATTTCTTATATC 397
BSNT_00572___ 397 GAGACCTCCTTCCATGTCGGGAAAATCATTTATAAAACGAATAAA---TT 443
.|| |.|||||.|||||||||||.||||||||||| |||.||| .|
BL01712___ycg 398 AAG-CTTCCTTTCATGTCGGGAAGATCATTTATAA---GAAAAAACGCCT 443
BSNT_00572___ 444 GAAACAGGAAAAGGAAGAAAAAGCAGAGGATCTCATCAAACGGGCGAT-- 491
.|||||.|||||.||||||.|.||.||.||.||...||||..|||.||
BL01712___ycg 444 CAAACAAGAAAAAGAAGAACAGGCGGAAGAGCTTTACAAAAAGGCAATTA 493
BSNT_00572___ 492 -CTATCAGCAATTTACCTCTGAGAAGGAACTCAGACGGGA----AGCTGA 536
|.||||| || |||.||||.| ||||||
BL01712___ycg 494 ACGATCAG----TT----------------TCAAACGGAAAAAGAGCTGA 523
BSNT_00572___ 537 AAG--------GAT-----CAACACCGTGCTGCCTTCCATGTTTTCAGTT 573
|.| ||| .|||..|||.|||||..||.|||||.|.||.
BL01712___ycg 524 AGGCCGCCGCCGATAAAGCGAACGTCGTCCTGCCGGCCGTGTTTACCGTC 573
BSNT_00572___ 574 GTGATCCTGCACGCCGCAAATGGGGATGGGGAAGCGGTTGAGGATTTAAA 623
.||.|.||.||.|.||...|.|||||.|..|||..|.|.||.|||.||||
BL01712___ycg 574 ATGGTGCTTCAAGTCGTTGACGGGGAGGATGAACTGCTCGAAGATCTAAA 623
BSNT_00572___ 624 GGAAAATATCAGGTCGT------ACCTGAATTTACGGGATAAGGTCAGTC 667
|||||..|||.||||.| ||||||| .||.||..||||||
BL01712___ycg 624 GGAAACGATCCGGTCTTATTTAAACCTGAA------AGACAACATCAGTC 667
BSNT_00572___ 668 ATGT-CTTAACGATCGAATCAAATATTG---TCATCGTCGTAGCGAGTTT 713
|.|| ||..|.|||| |.||.|||||.| ||||.|||| || |||.|
BL01712___ycg 668 ACGTACTGGAGGATC-ATTCGAATATCGCAATCATTGTCG--GC-AGTGT 713
BSNT_00572___ 714 TTCCCAAAAAAGCTCCG---TCTCCTCAGCAGCTTCTGAGTTTATTAACA 760
.||.|..||..|.|||| |..|| ||.||.||.||..|.||.|||.
BL01712___ycg 714 GTCGCGCAAGCGTTCCGCGCTGGCC---GCTGCCTCAGAACTGATCAACC 760
BSNT_00572___ 761 AGCTGTTAACACATTTTCACTTTCAAAAAATACCTACCCC-TATTTATAT 809
..|||||.||.|||.|.|.||..|||| ..||.|||| |||||..||
BL01712___ycg 761 GTCTGTTGACCCATCTGCGCTCGCAAA----TGCTGCCCCTTATTTTGAT 806
BSNT_00572___ 810 CGGTATCGGAAACGAATA--------TAATCACCTATTAAAACTTGGCAA 851
|||..||||.||.||.|| |..||.|| ||.|||||
BL01712___ycg 807 CGGGGTCGGCAATGAGTACAGCAGCCTGCTCTCC--------CTCGGCAA 848
BSNT_00572___ 852 GAGCTACACAGAAGCACTTGAAGTCATCAAAGCCGCAGAAATCACCGGCA 901
.|||||||.|||.||.||..||||.|..|||||.||.||.|||||.||.|
BL01712___ycg 849 AAGCTACAGAGAGGCGCTCCAAGTGACGAAAGCAGCGGAGATCACGGGAA 898
BSNT_00572___ 902 ATCAGGAAAACATTCCATATGAATATGCCAAA--CTCGGCATTTACCGCT 949
..||.|||.|||||||.||||||||| |||| |||||..|||.|...|
BL01712___ycg 899 GCCAAGAACACATTCCCTATGAATAT--CAAAAGCTCGGGCTTTTCAAAT 946
BSNT_00572___ 950 ATTTAGA--AAGCATCGAACAG--AAAAATGAATTTTTAGAATACGAGAA 995
||.|.|| || |||| |.| |||||.||...|.|..||||.|
BL01712___ycg 947 ATCTTGACCAA--ATCG--CCGCAAAAAACGATCATCTGCAATATG---- 988
BSNT_00572___ 996 TAAA----GA--TTTAGCTTTATTAAAAGCGAAAGACGAAGAAAGCAGCA 1039
|||| || ||.||| |..|.||||..|||||..||||||||..||
BL01712___ycg 989 TAAACCCGGACCTTCAGC--TGCTGAAAGAAAAAGATAAAGAAAGCCACA 1036
BSNT_00572___ 1040 CTGAGCTGCTCAAAAC-CTTGGAAATCTATCTCCTCAACAACTGCAAAAC 1088
|.||..|..|.|.||| ||| ||||||||||||.|||||||.|||||...
BL01712___ycg 1037 CCGAATTTTTAAGAACGCTT-GAAATCTATCTCGTCAACAATTGCAAGGT 1085
BSNT_00572___ 1089 AAAACCAGCGGCAGAACAGCTGTTTATTCACCAAAATACATTGAATTACC 1138
.||.|||.|.|||||||||||||||||.||||||||.||..|.||.||||
BL01712___ycg 1086 CAAGCCATCCGCAGAACAGCTGTTTATCCACCAAAACACGCTCAACTACC 1135
BSNT_00572___ 1139 GCATCAAACAGATTACT-GAGATGACGTCGATCGATTTAAGCGATTTCAG 1187
|.||.||||| |.||.| ||.|||||.|||||.|||.|.|..|||||.|.
BL01712___ycg 1136 GAATTAAACA-AATATTGGAAATGACATCGATTGATCTCAATGATTTTAA 1184
BSNT_00572___ 1188 AACGCGGTGCCAGCTCTATCTCGATTTGATGCTGATGAA-AAAG------ 1230
.||..|.||.|||.|.|.|.|||||||.||||||||||| ||||
BL01712___ycg 1185 TACAAGATGTCAGTTGTTTATCGATTTAATGCTGATGAAGAAAGCAGGCT 1234
BSNT_00572___ 1231 --AAA---TAA 1236
||| |||
BL01712___ycg 1235 ACAAATCGTAA 1245
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