Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00497 and BL01689
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_00497___ycdC.1.5803.seq
# -bsequence dna-align/BL01689___ycdC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00497___ycdC-BL01689___ycdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00497___ycdC-BL01689___ycdC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00497___ycdC
# 2: BL01689___ycdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1697
# Identity: 882/1697 (52.0%)
# Similarity: 882/1697 (52.0%)
# Gaps: 496/1697 (29.2%)
# Score: 2002.5
#
#
#=======================================
BSNT_00497___ 1 ATGAAAGTAACAGAAAGAATCTCGAAAAACAATGACAATAATAGAAAAGG 50
BL01689___ycd 0 -------------------------------------------------- 0
BSNT_00497___ 51 ACCTTTCTTCACTTTAAATGAAGAAAGGTCTTTTTATATAATAAACAGGA 100
BL01689___ycd 0 -------------------------------------------------- 0
BSNT_00497___ 101 TTCTCTTTGTCGTAGACTCTTTGAAAGGGATGACTTCATTGGTTAATAAA 150
||||||..|.||
BL01689___ycd 1 --------------------------------------TTGGTTCGTGAA 12
BSNT_00497___ 151 CAGCTGAAAAAGAAGGCGCAGGAGATCGGAAATGTACCGACGCATTATGA 200
|||.|.|||.|.||.|||||....|||.|.||.||.||..|.||||||.|
BL01689___ycd 13 CAGTTAAAACAAAAAGCGCAATCCATCAGTAAGGTTCCCCCACATTATCA 62
BSNT_00497___ 201 GCTTGAGATAGAAGATTACGACCAAAA----GCAAAAGAAGAACGGGCAG 246
|||...|||.||||||||||...|.|| |.||||| ||| |||.|
BL01689___ycd 63 GCTCATGATCGAAGATTACGGAGAGAAGTACGAAAAAG-AGA---GGCGG 108
BSNT_00497___ 247 GCATATTTTATC---TGGAAGGACCCTAAAGATCCGGAAAAGCACATTAC 293
| .||||.|| |||.|||||..|.||||.|||||...|.||| ||.
BL01689___ycd 109 G---TTTTTTTCGCTTGGCAGGACATTGAAGAGCCGGAGCGGGACA-TAT 154
BSNT_00497___ 294 AGTTGAACTTAGA-AATGACGG-CGCTTTGCTCACCTTTTCAACAACTGT 341
.|.||.|.||||| .||.|.|| ||| ||..|||..||..||| ||..||
BL01689___ycd 155 CGGTGGAGTTAGATCATCAAGGCCGC-TTAATCAGTTTGACAA-AAGAGT 202
BSNT_00497___ 342 -----CCGCTCCGAGACAGACAAACAACTTCCAGATGCCGAGCTGAAGCT 386
||| |.|...||..||...|||||.||||....||||..||.
BL01689___ycd 203 ATGAACCG----GTGGTGGAGGAAGCTCTTCCTGATGAAAGGCTGCTGCA 248
BSNT_00497___ 387 GACGGCTCTTCAGTTTGCCGCTGTCCATCAT--CCCG---GCACATTTAT 431
.|..||.||||||||| .|.|..||.||| |||| ||.| .||||
BL01689___ycd 249 AATCGCCCTTCAGTTT---ACAGAACAGCATTACCCGAATGCGC-CTTAT 294
BSNT_00497___ 432 GAATTTTCATTTTCAAGGCAAGGAAG--AACGGGGGCAGCACA--TCCGG 477
|||||| .|||||.|.|.||.|||| || |||.||| || |
BL01689___ycd 295 GAATTT--GTTTTCCATGAAAAGAAGGTAA------CAGAACAATTC--G 334
BSNT_00497___ 478 TTTGTCTATAC-------CAAAATGGAGCTGGGGCTTCCGATTCCCAATT 520
||.|| |.||| ||.|.| |..||.|..||||||.|.||..|..
BL01689___ycd 335 TTCGT-TTTACGTATGTTCAGACT-GTCCTTGATCTTCCGCTGCCGCAGA 382
BSNT_00497___ 521 CAGGCTTTTTAATTGATATGAC-------------ACGCAGCGGTCAGGT 557
|.|||||| ||||.| |||.||.||| |.|
BL01689___ycd 383 CGGGCTTT--------TATGTCCGGGTCGCCAAGAACGGAGAGGT--GAT 422
BSNT_00497___ 558 TGTCCACTTTCTATATTACG--GGGAAGGG---------CAT---AAAGC 593
|| |.||||..|||.||| ||||.|.| ||| |||||
BL01689___ycd 423 TG---AGTTTCGCTATAACGGCGGGACGAGCTCTTTCTCCATTCCAAAGC 469
BSNT_00497___ 594 CGA-AGTTCCGACGGAATTTGTAGCAAAAGAGAAGGTTGTGTCCCATTA- 641
.|| ||.|...|.|.|||..|||.|| .||.||||
BL01689___ycd 470 AGATAGCTGATAAGCAATCGGTAACA---------------GCCGATTAT 504
BSNT_00497___ 642 CTTAAACA----CAATGTC---TT-----TTGA--------GC--TGA-- 667
|||.|||| |||| || || |||| || |||
BL01689___ycd 505 CTTGAACATGTTCAAT-TCGAATTGGCGGTTGAAAAAATCCGCAGTGAAC 553
BSNT_00497___ 668 TGTACGATGTCATTGATGGCGAACAGGAAC-----CAAGGCTTGTATATG 712
|.|| |||.||.|.|.|.||.| || .|||.|.||.|
BL01689___ycd 554 TTTA---------TGAAGGGGGAGATGATCTCCCGCA--TCTTATTTACG 592
BSNT_00497___ 713 AA-CCGATTCTCCCGGGATACAGCTATCCCGCAGATGTAGACGAAATTGT 761
|| |.||.| |.|||...|.||||||||||||.|||.| .|||.||....
BL01689___ycd 593 AAGCAGACT-TGCCGTTTTTCAGCTATCCCGCCGATAT-CACGGAAAAAC 640
BSNT_00497___ 762 GCCCGA-----CCAGCATATCGCAGATGA-----AAGAATAGAAAACACG 801
|||.|| ||.|| .||.||||| |||| ||||.||||.
BL01689___ycd 641 GCCAGATGAAGCCTGC----GGCTGATGACGAGGAAGA--AGAAGACACA 684
BSNT_00497___ 802 GCGCCACTGCC---GCCGCTTCAGAACAAGGAAG------AAGTTGATAT 842
..|||.||.|| ||.||.| .|||..| |.|.||||||
BL01689___ycd 685 TTGCCGCTCCCTGTGCTGCCT------GAGGCTGACCGTCATGCTGATAT 728
BSNT_00497___ 843 ATTTGCCTTGCTGGGTTTTACCTCTGATATGCAGAAAGTCAGTGAAAGAG 892
...||.|.||.|.||.||||||.||...||||..|||.||.|.||||..|
BL01689___ycd 729 CGATGACATGATCGGCTTTACCCCTTCGATGCGAAAAATCCGCGAAACCG 778
BSNT_00497___ 893 ACTTTGGAGAACAAATTGGAAGCACA---TGGCGC-----AGA-GGCGCT 933
|.||.|||||...||||||| ||| |||||| ||| |.|.||
BL01689___ycd 779 ATTTGGGAGAGTCAATTGGA---ACAGTGTGGCGCCTGGGAGACGACCCT 825
BSNT_00497___ 934 GCGCCGGAGCGTAAG-GATTTAAGCATAAGAAGCTATTTTGAAACGAGAA 982
|.|||| || |||...||.|||....||||.||||||||..|.|
BL01689___ycd 826 GAGCCG-------AGAGATCGGAGTATAGCCGGCTACTTTGAAACATGGA 868
BSNT_00497___ 983 ATAAAAACACAATCAAAAT----GAAGACGGATAAAAGAAC---CGGAAA 1025
|..||||.||..|.||||| .||||| ||.||| .||||.
BL01689___ycd 869 ACCAAAATACGTTGAAAATCGTGAAAGAC------AAAAACTCGGGGAAG 912
BSNT_00497___ 1026 ATTAAAAGCAGCGCTTTCTTTTAT-GGAGCGGCCGAACAACCGCCAATGC 1074
.|.|||.|.|.||| ||||||||| ..|.|| |||..|||.|| ||
BL01689___ycd 913 CTCAAAGGAATCGC-TTCTTTTATCAAATCG---GAAGGACCCCC--TG- 955
BSNT_00497___ 1075 TC-----CACGGAAGAATGCCAAGAGATA---GCGCTTCAATTTTTGTAT 1116
|| |..||||||.||| ..||.| |||||.|||||||||||.
BL01689___ycd 956 TCTTGAGCGGGGAAGACTGC---TTGAAACGGGCGCTGCAATTTTTGTAC 1002
BSNT_00497___ 1117 GCCCTCTAT-CCGA----GAGCGGCTGAGTTTTTCAGGGTGAAT---CCC 1158
...||.||| |||| ||.|||| |||||| |||| .||
BL01689___ycd 1003 AGGCTTTATCCCGACGCTGATCGGC----TTTTTC-----GAATGCATCC 1043
BSNT_00497___ 1159 GTCCGAATTGATGAAAGAGGGAGA---GTC---CGCAACCATTTTTCTGT 1202
|.|.||| ||.||.||.|| ||| |||| .||||||..|
BL01689___ycd 1044 GGCGGAA------AATGACGGGGACAGGTCAAACGCA---TTTTTTCAAT 1084
BSNT_00497___ 1203 CTG-------GTATAAAGGAGTGCCGCTGCGGTTCGGCGCTGCCCGCATC 1245
.|| .||.|||||.||||||.|..||.|.|||.|||||...|||
BL01689___ycd 1085 TTGATCTTCAATACAAAGGGGTGCCGTTAAGGCTTGGCTCTGCCAATATC 1134
BSNT_00497___ 1246 ATTGTCAATCCGGA-AACTGGGTTGATTGACGCTT-TTATGGCGCCTGAT 1293
|...||||| |||| |||.||...|.|.|.||.|| |.|.||| ||.||.
BL01689___ycd 1135 AGCATCAAT-CGGACAACCGGCAGGGTCGTCGGTTATCACGGC-CCGGAA 1182
BSNT_00497___ 1294 ATTGAACCTGAACAATTGGAAGC-GATAAATCACAG------GCCGGAT- 1335
||.||.||.||| |.|| |||..|||..|| ||| ||
BL01689___ycd 1183 ATCGAGCCGGAA-------ACGCTGATCGATCTGAGTCCTTCGCC--ATC 1223
BSNT_00497___ 1336 -GTTTCCGCTGAAGAAGCGAGAGAAG-CGTTTTT--AGCCGCTTTTGATG 1381
.||||.|..||.||||||| ||| ||||||| |||.||.|||||||
BL01689___ycd 1224 CATTTCAGAGGAGGAAGCGA---AAGCCGTTTTTGCAGCGGCATTTGATG 1270
BSNT_00497___ 1382 TGAAGCTGGAATGGCA----GCCTGACTTTACTGCAGGCAGTGACCAGCA 1427
||||||||.|.|||.| | |||.|||.| |.||..||.|
BL01689___ycd 1271 TGAAGCTGCAGTGGGAAAGGG---------ACTACAGTC-GGGAAAAGGA 1310
BSNT_00497___ 1428 ------CTACAAACTTGTCTATAAGCCGGTTTACCCTTCCTATATTGATG 1471
|||||..||||||||...||||||.|||||||.||.|||.|||
BL01689___ycd 1311 TGACTTCTACAGGCTTGTCTACCGGCCGGTATACCCTTACTTTATCGAT- 1359
BSNT_00497___ 1472 CGCACAT-AAGGAAAAAGAAAAGGC---TGTGA-------------- 1500
||.||| |.|| |||||| |.|||
BL01689___ycd 1360 -GCCCATGACGG-------AAAGGCGTTTATGAGCAAAAACATATAA 1398
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