Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00531 and BL01680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:10
# Commandline: needle
# -asequence dna-align/BSNT_00531___amhX.1.5803.seq
# -bsequence dna-align/BL01680___hipO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00531___amhX-BL01680___hipO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00531___amhX-BL01680___hipO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00531___amhX
# 2: BL01680___hipO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1472
# Identity: 667/1472 (45.3%)
# Similarity: 667/1472 (45.3%)
# Gaps: 616/1472 (41.8%)
# Score: 1133.5
#
#
#=======================================
BSNT_00531___ 1 ATGCAAAAGC--TTTCAG-AAGACAT-GAAACAAACCATTATGGACATCT 46
|||.||||.| .||.|| ||||.|| |||| ||.|
BL01680___hip 1 ATGAAAAAACAAATTGAGAAAGAGATCGAAA---------------ATAT 35
BSNT_00531___ 47 TC-----GAGCATCTGC----------------ACGCGA--ATCCTGAAG 73
|| ||||..|||| |.||.| ||||||||
BL01680___hip 36 TCGTGAAGAGCTGCTGCATATCAGCCAGTATATAGGCAATCATCCTGAA- 84
BSNT_00531___ 74 TCAGCTG------GAAGGAATATGAGACAA--CTTCATTTTTGAAACAAA 115
||| ||||.|.| ||| |||| ||
BL01680___hip 85 ----CTGGGGCACGAAGAATT------CAAAGCTTC------------AA 112
BSNT_00531___ 116 AGCTT------GAGGATTTAGGGTGCCGGACGCGCAC-GTTTTCAG---- 154
||.|| ||||| ||.|.|....||| ||||||||
BL01680___hip 113 AGATTCTGTCCGAGGA--------GCTGAAAAAACACGGTTTTCAGGTGG 154
BSNT_00531___ 155 -ACT--GCAC---CGGGGTTGTCGGCGAAATCGGCTCAGGCTCACCTGTT 198
|.| |||| |||..|| |||| |||| |||
BL01680___hip 155 AATTAGGCACATGCGGCCTT----GCGA---CGGC------------GTT 185
BSNT_00531___ 199 GTAGCGGTACGCGCTGATATTGAC-GC-GCTGT---GG------CA--GG 235
|||| ||.||..||||| || ||.|| || || ||
BL01680___hip 186 -------TACG-GCCGAGTTTGACAGCGGCCGTCCCGGTCCTTCCATTGG 227
BSNT_00531___ 236 AGGTTAACGGC----------ACATTTCGCGCC-------AACCATTCCT 268
| ||.|.||| .|||| ||| ..||||.|||
BL01680___hip 228 A--TTTATGGCTGAATATGATGCATT----GCCTGACCTTGGCCATGCCT 271
BSNT_00531___ 269 GCGGACACGATTCACATATG------ACAATGGCATTGGGCACGTTAAT- 311
||||.|||.||| || ||.|||||..|.|||.|...|||
BL01680___hip 272 GCGGGCACAATT------TGATCGGCACGATGGCGGTCGGCGCCGCAATC 315
BSNT_00531___ 312 -GCTGCTAAAAAAACAACCTGA--GCTTC---CGAAGGGTACAATCCGTT 355
||..| |.|||..||| ||.|| ||.||| |.|| .|
BL01680___hip 316 GGCGTC------AGCAAAGTGATTGCATCGTGCGGAGG--AAAA----GT 353
BSNT_00531___ 356 TTATCTTTCAG-----CCGGCAGAAGA---AAAAGGCGGCGGCGCCTTGA 397
.|||.|||..| ||.||.||.|| .||||||| ||
BL01680___hip 354 GTATGTTTACGGAACTCCTGCGGAGGAGACGAAAGGCG----------GA 393
BSNT_00531___ 398 AA-------ATGATAGAAGAAGGCGTGCTTGATGATATCGA-----CTAT 435
|| |||...|||.||||.||..|||||.|..|.|| ||||
BL01680___hip 394 AAAGTAACCATGGCCGAACAAGGGGTTTTTGATCACTTGGACGCCGCTAT 443
BSNT_00531___ 436 TTGTATGGCGTTCACGTCCGTCCGAT-----CCAGGAAACACAAAACGG- 479
.||| ||||| ||||| || .||.|||| |||.|||
BL01680___hip 444 ---GATG--GTTCA--TCCGT---ATTGCAGGCATGAAA---AAAGCGGG 480
BSNT_00531___ 480 ---CCGC----------TGCGCTCCGTCT---ATTCTGCACGGATCAAGC 513
.||| ||||.|||...| ||||| .|||| |||.
BL01680___hip 481 ACATCGCTGGCGATGGATGCGATCCAATTCGAATTCT--TCGGA--AAGG 526
BSNT_00531___ 514 CAGCACATTGAGGGAACGATCATCGGG----------GAAGAGACTCATG 553
|..|.|| ||.|| |||| |||| ||.|||..
BL01680___hip 527 CTTCGCA-TGCGG----------CGGGAGCACCTCACGAAG-GAATCAAT 564
BSNT_00531___ 554 GCGC------CCGTCCGCACCTCGGGAAAAACAG-CATTGAAATTGCGGC 596
|||| ||||| |..||| ||||.|| ||||
BL01680___hip 565 GCGCTCGATGCCGTC-------------ATTCAGACATTCAA----CGGC 597
BSNT_00531___ 597 ATTTCTTGTACATAAGCTCGGA---CTCATTCATATTGACCCGCAAATCC 643
||| .||..||||.|| |.||||| |||
BL01680___hip 598 ATT-------AATGCGCTCAGACAGCACATTC---------------TCC 625
BSNT_00531___ 644 CGCAT-ACCGTCAAAATGACAAAACTTCAAGCCGGCGGTGAAAGCTCTAA 692
|..|| .||| || |||| |||
BL01680___hip 626 CTGATGCCCG-------GA------TTCA------CGG------------ 644
BSNT_00531___ 693 CATCATTCC------AGGAAAAGC-----ATCGTTCAGCCTTGATTTGCG 731
.||.||||| |||.||||| || |||..||| |..||.||
BL01680___hip 645 GATTATTCCGGAGGGAGGGAAAGCGGCGAAT-GTTGTGCC--GGATTACG 691
BSNT_00531___ 732 CG------CA---------CAGACCAATGAAGCCATGGAGGCGTTAATCG 766
|| || ||||..||.| |.|.|||.|.||..
BL01680___hip 692 CGGTTGCCCAGTTTTACGTCAGAGGAACG-------GAACGCGCTTATGT 734
BSNT_00531___ 767 C-----------CGAGACA--GAAAGAGCCTGTG---AAGCGGCCGCCGC 800
| |||.|.| ||||.| .|||| ||||||||||...
BL01680___hip 735 CAATGAACTGCTCGATAAAGTGAAAAA--TTGTGCAAAAGCGGCCGCACT 782
BSNT_00531___ 801 TGCATTCGGCGCAAAAATCGATCTGCAAAAAGAACAC--------AGCCT 842
|||...|||.|| .||...|| |||.|.| |||..
BL01680___hip 783 TGCGACCGGAGC-----CCGGCTTG-----AGAGCTCTTTTTATGAGCTG 822
BSNT_00531___ 843 TCCTGCG-------GCAACACAAAACAAAGAAGCTGAAGCGATCATGGCA 885
||.|.|| | |||||||| ||||.|| .||.||
BL01680___hip 823 TCTTACGATGATTTG------AAAACAAA-----TGAAACG---CTGTCA 858
BSNT_00531___ 886 GAAGCCATTACAGATATCATCG---GGGCTGAGCGGCTTGATGACCCGCT 932
||.||..|||||.|.|.||| | |.|.||.||| |.||| ||.|.|
BL01680___hip 859 GACGCTTTTACACAAAACAT-GATCGAGTTGGGCG--TCGAT--CCGGAT 903
BSNT_00531___ 933 T---GTCACT-----ACCGG-CGGA-GAGGAT------------------ 954
| .||| | |.||| |||| ||||.|
BL01680___hip 904 TCGATTCA-TGAAAAAGCGGACGGAGGAGGTTCGGTTGATATGGGGAATG 952
BSNT_00531___ 955 ----------------TTCCATT----------------TTTAC-----G 967
||||||| |||.| |
BL01680___hip 953 TCAGCCAGATCGCGCCTTCCATTCATCCTTATGTGCAAATTTGCGATGAG 1002
BSNT_00531___ 968 CCGTGAAG-GTGCCGAATCTGAAAACA-ACGATGCTCG-GACTAGGC--T 1012
|||| |.| ||||| |.||| .|||...||| ||...||| |
BL01680___hip 1003 CCGT-ATGCGTGCC--------ACACACCCGAGTTTCGTGAAGCGGCCAT 1043
BSNT_00531___ 1013 GCGGGCTCCAGCCGG---------GACTCCATCATCCGCACATGACATTT 1053
|.| ||||||| |.||..||..||.||.||
BL01680___hip 1044 GAG-----CAGCCGGGGGTTCGAAGGCTTGATGCTCGGCGCA-------- 1080
BSNT_00531___ 1054 GACAGAAATGCGATGTTCAACGGCATTCA---CATTTTA---GC------ 1091
||| ||.|.|||||||| |||.|.| ||
BL01680___hip 1081 -----AAA--------TCTATGGCATTCACCGCATATGATGTGCTCATCA 1117
BSNT_00531___ 1092 --GAA----TGCCGTATTAAAAACTTTTCAAAAGGCTG-ATTCACCCGCT 1134
||| |||.|.| ||||| .|||||..| |||||.||..|
BL01680___hip 1118 ATGAAGAGCTGCTGAA--AAAAA------TAAAGGAAGAATTCAACCTTT 1159
BSNT_00531___ 1135 ----GCCGCTTACGTAAAATAA 1152
|.||||..|.|||
BL01680___hip 1160 TAAAGGCGCTGGCCTAA----- 1176
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