Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04882 and BL01678
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:04
# Commandline: needle
# -asequence dna-align/BSNT_04882.1.5803.seq
# -bsequence dna-align/BL01678___yusR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04882-BL01678___yusR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04882-BL01678___yusR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04882
# 2: BL01678___yusR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 790
# Identity: 521/790 (65.9%)
# Similarity: 521/790 (65.9%)
# Gaps: 98/790 (12.4%)
# Score: 1628.0
#
#
#=======================================
BSNT_04882 1 ------ATGAATGTCTTGAACAAAATAGCTCTCGTAACGGGGGGCGGCAC 44
||||| .||.||||.|||.||.||.||.||.||||||||
BL01678___yus 1 ATGGAAATGAA------AAATAAAACAGCCCTTGTCACAGGAGGCGGCAC 44
BSNT_04882 45 AGGAATCGGAAAAGCAGCCAGTATGG----AATTGGCAAAGCGCGGG--- 87
|||.|||||.|.|| |.||||.| ..||||||||.||.|||
BL01678___yus 45 AGGGATCGGCAGAG----CGGTATCGCTCTCTTTGGCAAACCGAGGGGCA 90
BSNT_04882 88 GCGATTGTGGCGGTGAATTATTCACGCTCGCAATCAGAAGCGGAGGAAAC 137
|||.|||| .||.||.|||||.||.||..||.|.||.||.||.||.||
BL01678___yus 91 GCGGTTGT---TGTCAACTATTCGCGTTCCAAAGCGGAGGCTGAAGAGAC 137
BSNT_04882 138 AGTGGAAAAGATTCGAAAAGC-TGGCGGGCAAGCCTTCGCCATCCAAGCA 186
.||.|.||.|||| ||||..| .|||||.|..||..||||..|..||||.
BL01678___yus 138 GGTTGGAATGATT-GAAAGTCAAGGCGGCCGCGCGCTCGCGGTGAAAGCC 186
BSNT_04882 187 GATGTATCTAAAAACAGCGACGTGCAGGATATGGTTCAAACAATC----- 231
|||||.|||||.|.|||.||.||.||.||.|||.|| .|||
BL01678___yus 187 GATGTTTCTAAGATCAGTGAAGTTCAAGACATGTTT-----GATCGGGCG 231
BSNT_04882 232 GTGAAAACATACGGC----------CCGATTGATGTTTTAGTCAACAATG 271
||| ||| ||| |.|||.|..|.||||||||||
BL01678___yus 232 GTG---------GGCGAGTTCGGTACCG-TCGATCTGCTCGTCAACAATG 271
BSNT_04882 272 CCAGCATTACACGGCATATTCCAA--TGGATGATCTTG--AGGCTGCGAC 317
|.|||||.||..||||||| |.| |.||||| |||| ||| .||..|
BL01678___yus 272 CAAGCATCACCAGGCATAT--CGAGCTTGATGA-CTTGGAAGG-GGCTTC 317
BSNT_04882 318 AGAAGACGTCTGGGATGAGCTGTACGCCGTCAATGTGAAAGGGATGTTTT 367
.|||||.|||||||||||.|||||.||.||.|||||.||||||||||||.
BL01678___yus 318 TGAAGAAGTCTGGGATGAACTGTATGCGGTAAATGTCAAAGGGATGTTTA 367
BSNT_04882 368 TCTGCGCGCGGGCAGTGGTTCCGTTCATGAAG----AAAAGCAAGGCCGG 413
..||.|||.|.||.|.||..||.||.|||||| |.||.||||||
BL01678___yus 368 ATTGTGCGAGAGCGGCGGCACCTTTTATGAAGCGAAATAAACAAGGC--- 414
BSNT_04882 414 GGCGATTGTAAACGTCGGCAGCATTGCAGGGGTAACTGGTGCCGGCTCAT 463
||.||.|||||.|||||||||||.||.|||.|.||.|||.|.|||||.|
BL01678___yus 415 -GCCATCGTAAATGTCGGCAGCATCGCCGGGCTTACCGGTTCAGGCTCTT 463
BSNT_04882 464 CTATGCCTTACGCAGTATCAAAATCGGCGGTGCACGGTTTAACGAAATCA 513
|..|.||.||.||.|||||||||.|||||||.||||||.|.|||||||||
BL01678___yus 464 CGTTACCCTATGCCGTATCAAAAGCGGCGGTCCACGGTCTGACGAAATCA 513
BSNT_04882 514 TTGGCTCACGC-CTTAGCGCCTGAAATCAGAGTGAGCGGTGTAGCACCAG 562
|||||.||.|| ||| ||.|||||.||.|||||.|||.||||.|||||.|
BL01678___yus 514 TTGGCGCATGCGCTT-GCTCCTGATATTAGAGTCAGCTGTGTGGCACCGG 562
BSNT_04882 563 GAGCTGTGGCAACGAGATGGTGGGCTGGCCGGGAAGAAAAAATGAAAAGC 612
|.||.||..|||||||||||||||..||....|||||.|||||| ||||
BL01678___yus 563 GCGCGGTATCAACGAGATGGTGGGAGGGGAATGAAGAGAAAATG--AAGC 610
BSNT_04882 613 ATGATTGGCTC--------TTTGCCGCTGCAGTGTATTGCTGAACCAGAG 654
||||| ..|.|||||..||.|.||.||.|||||.||.
BL01678___yus 611 ------GGCTCAGCCAAAAGCTCCCGCTTGAGCGGATAGCGGAACCGGAA 654
BSNT_04882 655 GAGGTTGCCAAATTG---ATTTGTTCATTAGTTGAACAGGAATCACTCAC 701
||..|.||| ||| ||||||.|..|..|.|||||.|||.||.|.||
BL01678___yus 655 GATATCGCC---TTGCTCATTTGTGCGCTGCTCGAACAAGAAACAGTTAC 701
BSNT_04882 702 AGGCCAAATTATCACAATTGACAGCGGACAGACGCTGTAA 741
|||||||||..|.||...||||.||||.||.||..|.||.
BL01678___yus 702 AGGCCAAATCTTAACGGCTGACTGCGGTCAAACATTATAG 741
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