Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00482 and BL01670
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_00482___yccF.1.5803.seq
# -bsequence dna-align/BL01670___yccF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00482___yccF-BL01670___yccF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00482___yccF-BL01670___yccF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00482___yccF
# 2: BL01670___yccF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1215
# Identity: 719/1215 (59.2%)
# Similarity: 719/1215 (59.2%)
# Gaps: 285/1215 (23.5%)
# Score: 1801.0
#
#
#=======================================
BSNT_00482___ 1 GTGGGAAAAGTGAAACGAAATGCCCCTTGCCCATGCGGCAGCGGCAAGAA 50
|||||||||||.|||.|||||...||||||||.|||||||||||...|||
BL01670___ycc 1 GTGGGAAAAGTAAAAAGAAATATGCCTTGCCCCTGCGGCAGCGGGCTGAA 50
BSNT_00482___ 51 ATATAAAAAATGCTGCGG--AAGTAAAGTTGTCGACTTCCCGGCGGAACT 98
|||||||||||||||||| |||.|.|| |..|..||.|||||.| |
BL01670___ycc 51 ATATAAAAAATGCTGCGGCAAAGCAGAG--GGAGCGTTTCCGGCTG---T 95
BSNT_00482___ 99 AGCGGCAAAAGAAGCGAAACAAATTCAGGAAGACTTAGTGGAGTATGCCT 148
.||||...|||||..|||||||||.|||.|||||.|..||||.|..||.|
BL01670___ycc 96 CGCGGTGCAAGAATTGAAACAAATCCAGAAAGACGTCATGGAATTCGCTT 145
BSNT_00482___ 149 TCACAGTACATAGAGAAAGCATT---TCAGGCTTTATCAACCAGCATGAT 195
|.||.|.|||||.|||.| ||.| ||| .|||.||||.|||.||..|
BL01670___ycc 146 TTACGGAACATAAAGACA-CAATCGATCA--ATTTCTCAATCAGTATTCT 192
BSNT_00482___ 196 TTTCTTTCTGCTATGGA-CAGACAGACG--AAAGACATCAGCGTATTTAA 242
|||||.||.|...|||| |||.|.| || |||||.|| |.||.|||||
BL01670___ycc 193 TTTCTGTCAGACCTGGATCAGTCTG-CGCAAAAGATAT--GTGTTTTTAA 239
BSNT_00482___ 243 CTTAGGAATCTGGGGAATCTTCTTCCACCCGCTTGCTGGT-GAGAA--GA 289
|.|.||..|.||||||.|.||...||.||||||.||.|.| |||.| ||
BL01670___ycc 240 CCTGGGCGTGTGGGGAGTATTTGCCCGCCCGCTGGCAGATGGAGGATTGA 289
BSNT_00482___ 290 CAATCTTCGAAGAGTACCTT----CAGAAAAAAGG-----CGATTCGATC 330
|.||.||.||||| ||| ||||||||||| |||||| ||
BL01670___ycc 290 CGATTTTTGAAGA----CTTTTTACAGAAAAAAGGATCTTCGATTC--TC 333
BSNT_00482___ 331 A-CTCGTCCGAAAACG-----CGTGAGATCGTAGAATCATGGCAGAGCAT 374
| .||| |.||.||.| |||...|||||.||| ||| |.|
BL01670___ycc 334 AGATCG-CAGACAAAGGAAGCCGTTCAATCGTGGAA-------AGA-CCT 374
BSNT_00482___ 375 GACGCCTGCTTTATTGCTGC---TGAAGGACCTGAAGGAAGGCATCATTC 421
..|.||||| .||||||| ||||..|..|.|..||.|||..|||||
BL01670___ycc 375 CTCCCCTGC---GTTGCTGCGTGTGAAACATATAACAGATGGCGGCATTC 421
BSNT_00482___ 422 ACTTTGAAGATG-TGATTACGGCAAAACAATTCGAAGTG--------GAA 462
.||||||.|||| || |.||| ||| ||||.| ||
BL01670___ycc 422 GCTTTGAGGATGCTG-TAACG-------AAT--GAAGAGCTGACCGTGA- 460
BSNT_00482___ 463 ATGGACGCCAGCAATCAAGACCTTCCTCCAGT-----GGGAA--GCCT-- 503
|||.| ||| || ||||| ||||
BL01670___ycc 461 --GGATG-----AAT---------------GTGAAACGGGAAGGGCCTTT 488
BSNT_00482___ 504 -------GA-----TTCTTGGATACCCAATCCACGAAG--CGGAA---AA 536
|| |.||.||.|..||.||| ||| ||||| |.
BL01670___ycc 489 TGTAGGCGAGTACGTGCTCGGCTTTCCGATC----AAGATCGGAAGCCAT 534
BSNT_00482___ 537 AGCAGAATTCTTCATGCAGTTCACGATCT-TCCCGGTGAAGAGAA---CA 582
| |.||.||||||.||||.|||||.|||| ||| ||.| |.|| |.
BL01670___ycc 535 A-CCGAGTTCTTCTTGCAATTCACCATCTATCC---TGCA-AAAATGGCG 579
BSNT_00482___ 583 GAAGCGCT---------GATCAGCAAGG---TGAAGAAATATGCGGATGC 620
||.||.|| |.|.|||.||| |||| |
BL01670___ycc 580 GATGCTCTCAAAGACAGGCTAAGCGAGGCTTTGAA--------------C 615
BSNT_00482___ 621 CGCTGT------GAAGGACGG--CAAAACGCCGGAGGACTTCATGA-AGC 661
||.|.| ||||| ||| |.||| |||.|..|.|||| ||
BL01670___ycc 616 CGTTTTACAGAAGAAGG-CGGGACGAAA-----GAGCAGCTGATGAGAG- 658
BSNT_00482___ 662 AGGAATT-CAACAACGTTCTGTT--CGCGTTGTTAGCTG--AGAAAGATG 706
||||.|| ||.|| |.|||| .|| .|.||.||.| || |
BL01670___ycc 659 AGGATTTCCATCA----TGTGTTAATGC-ATCTTTGCCGGCAG------G 697
BSNT_00482___ 707 AAGAGCCAAAAGCAGA------GAAAGCGGAAGT-----AAG-CACTGTT 744
||||| ||.|.| ||| .|||| ||| || |.
BL01670___ycc 698 AAGAG-----AGTACACCGTCTGAA----CAAGTGTCCGAAGACA---TC 735
BSNT_00482___ 745 GAGTGGGCAAACGACTTGGAGAAAGAAAC--CGCTGCGGCTATTGAAGAA 792
||.|||||.||.||..||||.|||||||| |||| .|.|.||||..||
BL01670___ycc 736 GAATGGGCCAATGAGATGGAAAAAGAAACAGCGCT--CGTTTTTGAGAAA 783
BSNT_00482___ 793 GGCATGAGCGGGGAAGAGTATCCGA----CTGAATTGATCCCAGCTGT-T 837
||.|||...|..|||| || ||||| |||..||| |
BL01670___ycc 784 GGTATGCTTGACGAAG-------GACATTCTGAA------CCATTTGTGT 820
BSNT_00482___ 838 ATT---------GCCATCTGGAAAAC--ATTCTGCGAGAAAAAATCACCT 876
..| ||| |.||||||.| |||.||| .||||||.||||.
BL01670___ycc 821 CCTGGGCGGTCGGCC-TTTGGAAATCGTATTGTGC--CAAAAAAGCACCG 867
BSNT_00482___ 877 GTCATCAGAAAGCCGGAAGCTTTTGCGGCGGCAGTTGAATATTATGTAAA 926
|||||||.|||..|.|||||.|||||.||.||..|.||.||||.|.|.||
BL01670___ycc 868 GTCATCAAAAAAACAGAAGCCTTTGCAGCTGCTTTGGAGTATTTTATCAA 917
BSNT_00482___ 927 CGCGATTTCTCTTAA-CGG------CGCGTCCGTTTCCCAGGCTAAACTG 969
..||| ||||..|| ||| || .|.|||||.||.||.||.
BL01670___ycc 918 TACGA--TCTCCAAATCGGAAAAATCG-----ATATCCCAAGCAAAGCTT 960
BSNT_00482___ 970 GCGAAAAAATACGGCGTCAGTGCATCAACGATTTCCAGCCGTTACAAAGA 1019
||.|||||||||||||||||.||.||.||..|.||.|..||||..|||||
BL01670___ycc 961 GCAAAAAAATACGGCGTCAGCGCTTCGACCGTATCGAATCGTTTTAAAGA 1010
BSNT_00482___ 1020 AATTGAAAGCACG--CTGCAAGATGAA---GCAGATCGTTTTGCACAAGC 1064
.|||| |||| || |||||.|||||| |...|||.|.||| |||
BL01670___ycc 1011 TATTG-AAGC-CGTCCTGCAGGATGAACTTGACCATCATCTTG----AGC 1054
BSNT_00482___ 1065 GTTAT--CCTCATAA 1077
|||| |.||.|||
BL01670___ycc 1055 -TTATGCCATCTTAA 1068
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