Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00443 and BL01651
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence dna-align/BSNT_00443___ycbH.1.5803.seq
# -bsequence dna-align/BL01651___garD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00443___ycbH-BL01651___garD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00443___ycbH-BL01651___garD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00443___ycbH
# 2: BL01651___garD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1602
# Identity: 1124/1602 (70.2%)
# Similarity: 1124/1602 (70.2%)
# Gaps: 144/1602 ( 9.0%)
# Score: 3748.5
#
#
#=======================================
BSNT_00443___ 1 ----ATGGCGATGAACCTCAGGAAGAACCAAGCGCCCCTT-TACATCAAA 45
.||.|.||.||.|| |||.| |||.|| |||||.||.
BL01651___gar 1 ATGCTTGTCAATCAAACT------GAAAC-----CCCGTTGTACATTAAG 39
BSNT_00443___ 46 GTGCATGAAATAGATAACACCGCGATTATTGTAAATGATGGAGGACTGCC 95
|||.|.||||.|||.||..||||.||.||.|..||||..||.||||||||
BL01651___gar 40 GTGAACGAAAAAGACAATGCCGCAATCATCGCCAATGCCGGCGGACTGCC 89
BSNT_00443___ 96 -AAAGGGCAC--TGTTTTCTCATGCGGGCTCGTA--CTTGAAGA--GGAT 138
.||||| || |||||.|| |||||||| || ||..|||| |||
BL01651___gar 90 GCAAGGG-ACGGTGTTTCCT--TGCGGGCT--TAAGCTGCAAGAGCGGA- 133
BSNT_00443___ 139 GTTCCTCAAGGCCATAAGGTGGCCCTCACCGATCTCAATCA-AGGGGACG 187
||||||||||.|||||.|||||..|.||.||..||| || |||| ||
BL01651___gar 134 -TTCCTCAAGGGCATAAAGTGGCTTTAACAGACATCA--CACAGGG--CG 178
BSNT_00443___ 188 AGATCGTG--------CGTTACGGAGAGGTGATCGGATTTGCTGATGAGA 229
||| ||.|||||.||..|.|||||.|.|||.| |.|.|
BL01651___gar 179 -----GTGCCGTTATTCGCTACGGCGAAATTATCGGCTATGCCG-TCAAA 222
BSNT_00443___ 230 -CGATC---AAACGCGGGAGCTGGA--TACGGGAAGCCCTCGTGAGA--A 271
||||| |||.||||| |||| |.||.|..|| |.| |
BL01651___gar 223 CCGATCGAAAAAGGCGGG---TGGATTTCCGAGTCGC-------ATATCA 262
BSNT_00443___ 272 TG---CCCGCTCCTCCGGCGTTAGACGATCTTCCTCTCGCAAACAGGGTG 318
|| ||.|...|||||.||.|.||.||.||.||..||||.||||..||.
BL01651___gar 263 TGCTTCCGGAAGCTCCGCCGCTCGATGAACTGCCCATCGCCAACAAAGTT 312
BSNT_00443___ 319 CCGCAGCCGCG-GCCGCCTCTTGAAGGCTACACGTTTGAAGGATACCGAA 367
||..|.|| || .||.|.||||||.||.||.||.||||||||||||||.|
BL01651___gar 313 CCAAAACC-CGCTCCCCTTCTTGAGGGGTATACATTTGAAGGATACCGGA 361
BSNT_00443___ 368 ATGCGGATGGCAGTGCGGGGACAAAAAATATCCTCGGCATCACGACAAGT 417
|||..||.||.||.|..||.||.|.|||..|.||.|||||.|.||||||.
BL01651___gar 362 ATGAAGACGGGAGCGTCGGCACGAGAAACGTGCTTGGCATTATGACAAGC 411
BSNT_00443___ 418 GTTCAATGTGTTGTTGGTGTTTTGGATTATGCAGTCAAACGAATAAAAGA 467
||||||||.||.|..||.|||.|.|||||.|||||.||||||||.|||||
BL01651___gar 412 GTTCAATGCGTCGCAGGCGTTCTCGATTACGCAGTGAAACGAATTAAAGA 461
BSNT_00443___ 468 AGAGCTGCTGCCGAAATACCCAAATGTTGATGACGTTGTGCCGCTGC--- 514
.||.|||||.||.|||||.||.||.|||||.| |||.||||||
BL01651___gar 462 GGAACTGCTCCCAAAATATCCGAACGTTGACG-----GTGTCGCTGCATT 506
BSNT_00443___ 515 --ATCATCAATACGGATGCGGCGTGGCGATCAATGCGCCCGACGCTGTCA 562
|||||||.|||||.||||||||||||||.||||||||.||.||....|
BL01651___gar 507 AAATCATCAGTACGGCTGCGGCGTGGCGATTAATGCGCCGGAAGCCAAAA 556
BSNT_00443___ 563 TTCCGATCCGCACGATTCAAAATCTTGCGAAGCATCCGAACTTCGGCGGA 612
|.||||||||.||||||||||||.|.||.|.|||.||.||.||||||||.
BL01651___gar 557 TCCCGATCCGAACGATTCAAAATATCGCCAGGCACCCTAATTTCGGCGGT 606
BSNT_00443___ 613 GAAGTAATGGTAATCGGATTGGGATGTGAAAAGCTCCTCCCG-----GAA 657
||||..|||||.||||||.|.||.||.||.||||||||.||| ||.
BL01651___gar 607 GAAGCGATGGTGATCGGACTCGGCTGCGAGAAGCTCCTTCCGACGAAGAT 656
BSNT_00443___ 658 AGAATTGCCTCCGAAA----ATGATGATGACATTCTATCGCTCCAGGATC 703
||| .|||.|| |.|.|||..|||||||.||.||.|||||.|
BL01651___gar 657 AGA------GCCGGAAGGAGACGCTGAAAACATTCTTTCACTGCAGGAAC 700
BSNT_00443___ 704 ACCGAGGTTTTGCGGC-GATGATCCAATCCATTTTGGAAATGGCGGAGGA 752
..|.|||.||| |.|| .|||||.|||||.|||.||||||||||.||.||
BL01651___gar 701 GGCAAGGGTTT-CAGCAAATGATACAATCGATTATGGAAATGGCCGAAGA 749
BSNT_00443___ 753 ACGGTTAATCAGGCTGAACAGCAGAAC----CCGGGTGTCATGCCCTGTT 798
.||.||||..|||||||| .|||| .|||.||.||||.||.|.|
BL01651___gar 750 GCGCTTAAAAAGGCTGAA----TGAACGGAAGCGGATGACATGTCCCGCT 795
BSNT_00443___ 799 TCGGATCTGGTTATCGGCCTGCAATGCGGCGGCAGTGATGCGTTTTCCGG 848
||.||.|||||.||||||||.||.|||||.|||||.||.||.|||||.||
BL01651___gar 796 TCAGACCTGGTGATCGGCCTACAGTGCGGAGGCAGCGACGCCTTTTCAGG 845
BSNT_00443___ 849 CGTGACGGCGAACCCTGCCGT-GGGGTACGCGGCTGATTTATTGGTTCGC 897
.|||||.||.||||||| ||| .||.||.|||||.||.|||.|.||.||.
BL01651___gar 846 AGTGACCGCAAACCCTG-CGTCCGGATATGCGGCCGACTTACTTGTCCGG 894
BSNT_00443___ 898 GCAGGTGCAACGGTTTTGTTTTCTGAAGTGACAGAGGTGCGGGATGCCAT 947
|||||.||.||||||||.|||||.|||||.||.||.||.||.||||||.|
BL01651___gar 895 GCAGGGGCCACGGTTTTATTTTCGGAAGTCACCGAAGTCCGCGATGCCGT 944
BSNT_00443___ 948 TCATTTATTAACGCCGCGGGCTGTCAGTGAAGAGGTCGGACAATCACTGA 997
||||.|..||||.|||||.|||||||.||||||.|||||.|...|.||||
BL01651___gar 945 TCATCTCCTAACACCGCGCGCTGTCAATGAAGAAGTCGGCCGCGCCCTGA 994
BSNT_00443___ 998 TCAAAGAGATGAAGTGGTATGACAGCTATCTCCGGCGGG---GAGACG-- 1042
|....||.|||...|||||||||.||||||| || |||.||
BL01651___gar 995 TTCGGGAAATGGCTTGGTATGACCGCTATCT------GGAAAGAGGCGAA 1038
BSNT_00443___ 1043 -CAGACCGAAGCGCAAACCCGTCACCAGGCAATAAAAAAGGCGGATTATC 1091
|||||||||||||.||.|||||.||.||.||.||||||||||||.|..|
BL01651___gar 1039 TCAGACCGAAGCGCCAATCCGTCGCCGGGAAACAAAAAAGGCGGACTGGC 1088
BSNT_00443___ 1092 CAATGTGGTGGAAAAAGCGTTAGGCTCGGTAGCGAAATCAGGCACAAGCC 1141
.||.|||||.||.|||.||.|.||.|||.|.|||||.||.||.|..||||
BL01651___gar 1089 AAACGTGGTCGAGAAATCGCTCGGGTCGATCGCGAAGTCGGGAAGCAGCC 1138
BSNT_00443___ 1142 CCATCTCCGGCGTGCTCG-GCCCTGGTGAAAGAGCAGAGCAAAAAGGCCT 1190
|.|||...|.|||.||.| |||| ||||||||.||.|..||.|||||.||
BL01651___gar 1139 CGATCAGTGCCGTACTTGCGCCC-GGTGAAAGGGCTGTACAGAAAGGACT 1187
BSNT_00443___ 1191 GCTGTTCGCGGCGACACCGGCAAGCGATTTTGTGTGCGGCACCCTGCAGC 1240
..|.||.|||||||||||.||||||||||||||.||||||||||||||..
BL01651___gar 1188 CATTTTTGCGGCGACACCTGCAAGCGATTTTGTATGCGGCACCCTGCAAT 1237
BSNT_00443___ 1241 TGGCTGCGGGCATGAATCTGCAGGTGTTTACGACAGGGAGGGGAACACCA 1290
|||||.|.||||||.||.|||||||.|||||.||.||.||||||||.||.
BL01651___gar 1238 TGGCTTCTGGCATGCATTTGCAGGTATTTACAACCGGAAGGGGAACGCCG 1287
BSNT_00443___ 1291 TATGGCC------TGGCTGCTGCACCGGTGCTGAAAGTATCGACGCGGCA 1334
||.|||| ||||| |||||..|||||||..||||.|||||
BL01651___gar 1288 TACGGCCTTGAAATGGCT------CCGGTTTTGAAAGTGGCGACCCGGCA 1331
BSNT_00443___ 1335 TTCCTTATCAGAGCATTGGGCTGATTTAATCGATATCAATGCCGGCCGAA 1384
.||.||||||||..|||||...||.||.|||||..||||||||||..|.|
BL01651___gar 1332 GTCATTATCAGAAGATTGGCACGACTTGATCGACGTCAATGCCGGAAGGA 1381
BSNT_00443___ 1385 TCGCGACAGGAGAGGC--CAGTATCGAAGACGTAGGCTGGGAAATCTTCA 1432
||||.|||||.||.|| || ||.||.||.||.|||||||||||||||.
BL01651___gar 1382 TCGCTACAGGCGAAGCTTCA--ATAGAGGAAGTCGGCTGGGAAATCTTCC 1429
BSNT_00443___ 1433 GGACGATTTTGGATGTGGCAAGCGGCCGCAAACAAACGTGGGCTGACCGT 1482
|||||||..|.||.||.||||||||..|.| ||||.|||||.||.|.|
BL01651___gar 1430 GGACGATACTTGACGTCGCAAGCGGAAGGA---AAACATGGGCGGAACAT 1476
BSNT_00443___ 1483 TGGGGCCT-TCATAATGATTTGTGCTTGTTTAATCCTGCTCCAGTGACTT 1531
|||||.|| || .|||||.|||||.||.||.||.||.||.||.|||||||
BL01651___gar 1477 TGGGGACTCTC-CAATGACTTGTGTTTATTCAACCCAGCGCCTGTGACTT 1525
BSNT_00443___ 1532 GA 1533
||
BL01651___gar 1526 GA 1527
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