Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00441 and BL01649
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence dna-align/BSNT_00441___ycbF.1.5803.seq
# -bsequence dna-align/BL01649___gudD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00441___ycbF-BL01649___gudD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00441___ycbF-BL01649___gudD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00441___ycbF
# 2: BL01649___gudD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1393
# Identity: 1029/1393 (73.9%)
# Similarity: 1029/1393 (73.9%)
# Gaps: 50/1393 ( 3.6%)
# Score: 3664.5
#
#
#=======================================
BSNT_00441___ 1 ATGAGTTCACCGATACAAGAGCAGGTTCAAAAAGAGAAAAGATCGAATAT 50
||||.|.||...||.||..||||.||..||.|.||||||..||||.|.|.
BL01649___gud 1 ATGAATACAAACATCCATCAGCATGTAAAAGAGGAGAAAGCATCGCAAAC 50
BSNT_00441___ 51 TCCCTCAATTACTGAAATGAAGGTGATTCCTGTTGCGGGACATGACAGCA 100
.||.||.|||.|.||.|||..|||.||.||.||.||.||.|..|||||||
BL01649___gud 51 ACCGTCTATTGCCGACATGCGGGTTATACCCGTGGCAGGGCGGGACAGCA 100
BSNT_00441___ 101 TGCTGCTGAATCTAAGCGGAGCGCACAGCCCGTTTTTTACTCGGAATATC 150
||||..|||||.|.||||||||.|||.||||.|||||.||.|||||||||
BL01649___gud 101 TGCTTTTGAATTTGAGCGGAGCTCACGGCCCCTTTTTCACACGGAATATC 150
BSNT_00441___ 151 GTAATCTTAACGGA--CAGCA-GCGGAAATCAGGGAGTCGGCGAGGTGCC 197
||.||.||||.||| ||.|| ||| .||..||.||||||||.|||||
BL01649___gud 151 GTGATTTTAAAGGATTCATCAGGCG---CTCTCGGCGTCGGCGAAGTGCC 197
BSNT_00441___ 198 TGGCGGAGAGCATATTCGCCGCACACTGGAGCTGTCAGAGCCGCTTGTTG 247
.|||||.||||..||.||||..||.|||||||.|.|..|||||||.||..
BL01649___gud 198 GGGCGGCGAGCGGATCCGCCAGACGCTGGAGCAGGCGAAGCCGCTCGTCA 247
BSNT_00441___ 248 TCGGAAAATCTA-----TCGGTGC-GTACCAAGCGATATTGCAAACGGTC 291
||| ||| | ||||.|| || .|||.||||.|||||..|.|||
BL01649___gud 248 TCG----ATC-AGCCGCTCGGCGCTGT-TCAATCGATTTTGCAGTCCGTC 291
BSNT_00441___ 292 AGAAAGCAGTTTGGCGATCAGGACAGG------GGAGGGCGAGGAAATCA 335
||....|.||| |.|.|||||| |||||.||.||....||
BL01649___gud 292 AGGCGCCGGTT------TAAAGACAGGGATGCCGGAGGACGCGGGGTGCA 335
BSNT_00441___ 336 GACGTTTGATTTGCGCACCACTGTGCACGCCGTCACCGCACTGGAAGCGG 385
|||.|||||...|||.||.||..|.|||||.||.||||||.|||||||.|
BL01649___gud 336 GACCTTTGACCAGCGGACGACGATACACGCTGTGACCGCATTGGAAGCAG 385
BSNT_00441___ 386 CTTTGTTAGATTTGCTTGGAAAGTTTCT-----TCAGGAACCGGTCGCGG 430
|||||.|.||||||||.|||||.||||| || ||.||.||||
BL01649___gud 386 CTTTGCTCGATTTGCTCGGAAAATTTCTCGGCGTC-----CCTGTGGCGG 430
BSNT_00441___ 431 CTTTATTGGGCGAAGGGAAGCAGCGTGATGAAGTAAAAATGCTCGGTTAC 480
|..|.|||||.|||||..|||||||.|||.||||.||.||||||||.||.
BL01649___gud 431 CGCTCTTGGGGGAAGGCCAGCAGCGGGATAAAGTGAAGATGCTCGGCTAT 480
BSNT_00441___ 481 CTCTTTTATATCGGCGACCGAAAGCGGACGAC-CTTGCC-GTATCAAAGC 528
.|.|||||.|||||.|||||||||||.||||| |||.|| .|||| ||.
BL01649___gud 481 TTGTTTTACATCGGGGACCGAAAGCGCACGACGCTTCCCTATATC--AGT 528
BSNT_00441___ 529 GATGAGCAGTCAGATTGTGCGTGGTTCCGTCTGCGCCATGAGGAAGCGCT 578
||..|..||.||.||...|..|||||||.|||.||||.|||.||||||.|
BL01649___gud 529 GAACAAGAGGCAAATGACGACTGGTTCCATCTCCGCCGTGAAGAAGCGTT 578
BSNT_00441___ 579 GACGCCGGAGGCCATTGTGCGTCTTGCCGAATCCGCACAGGAGCGCTATG 628
|||.||.|||||.||.||.||||||||.||..|.||.|..||.||.||.|
BL01649___gud 579 GACTCCCGAGGCGATCGTCCGTCTTGCGGAGGCAGCCCGAGAACGATACG 628
BSNT_00441___ 629 GCTTTCAGGATTTCAAATTGAAAGGCGGGGTGCTGCAGGGAGAAGAGGAA 678
|.|||||.|||||.|||||.||||||||.||.||....||||||||.|||
BL01649___gud 629 GATTTCACGATTTTAAATTAAAAGGCGGCGTCCTTTCCGGAGAAGAAGAA 678
BSNT_00441___ 679 ATCGAAGCTGTTACCGCATTATCGAAACGTTTTCCAGAGGCAAGGATCAC 728
|||||.||.|...||||.|||.||||.||.|||||..||||.||.|||||
BL01649___gud 679 ATCGAGGCGGCATCCGCTTTAGCGAAGCGGTTTCCTAAGGCGAGAATCAC 728
BSNT_00441___ 729 TCTTGATCCGAACGGGGCATGGTCATTAGAGGAAGCTATTGCATTATGCA 778
.|||||.|||||.|||||.||||||||.||||||||.|||||..|.||.|
BL01649___gud 729 CCTTGACCCGAATGGGGCGTGGTCATTGGAGGAAGCGATTGCGCTTTGTA 778
BSNT_00441___ 779 AAGGAAAGCAAGATGTGCTCGCGTATGCGGAAGATCCGTGCGGGGATGAG 828
|.|||||||..|||||.||.||.||.||||||||.||.|||||.|..||.
BL01649___gud 779 AGGGAAAGCGGGATGTACTTGCCTACGCGGAAGACCCTTGCGGAGCGGAA 828
BSNT_00441___ 829 AATGGCTACTCCGCTCGTGAAGTAATGGCTGAATTCCGCCGCGCGACAGG 878
...||.|||||.|..||.|||.|.|||||.|||||||||||.||||||||
BL01649___gud 829 GCCGGATACTCAGGCCGGGAAATCATGGCCGAATTCCGCCGTGCGACAGG 878
BSNT_00441___ 879 GCTTCCGACTGCGACAAATATGATTGCGACAGACTGGCGGGAAATGGGTC 928
..|||||||.|||||.||||||||||||||||||||||||.|||||||.|
BL01649___gud 879 CATTCCGACAGCGACGAATATGATTGCGACAGACTGGCGGCAAATGGGGC 928
BSNT_00441___ 929 ACGCGATTCAGCTCCACGCGGTCGATATACCGCTGGCTGATCCGCATTTT 978
|.|||||.|||||.|||||.||.||||||||||||||.||||||||||||
BL01649___gud 929 ATGCGATACAGCTGCACGCCGTTGATATACCGCTGGCAGATCCGCATTTT 978
BSNT_00441___ 979 TGGACGATGCAAGGGTCGGTGCGGGTTGCGCAAATGTGCCATGATTGGGG 1028
|||||||||||.||.||.||.||.|||||.||||||||||||||.|||||
BL01649___gud 979 TGGACGATGCAGGGATCCGTCCGCGTTGCTCAAATGTGCCATGAATGGGG 1028
BSNT_00441___ 1029 TTTGACATGGGGCTCGCACTCCAACAACCACTTTGATATTTCCCTTGCGA 1078
..|||.|||||||||.||||||||.|||||.|||||..|.||.||.||.|
BL01649___gud 1029 GCTGATATGGGGCTCTCACTCCAATAACCATTTTGACGTCTCACTGGCCA 1078
BSNT_00441___ 1079 TGTTTACCCATGTGGCAGCAGCGGCTCCGGGGCG-GATCACGGCGATTGA 1127
||||.|||||.||.||.|||||.||||| ||||| .||||||||||||||
BL01649___gud 1079 TGTTCACCCACGTTGCCGCAGCAGCTCC-GGGCGATATCACGGCGATTGA 1127
BSNT_00441___ 1128 TACCCATTGGATCTGGCAGGACGGGCAGCGATTAACGAAACAGCCTTTTG 1177
|||.||||||||.||||||||.||.|||||..|.||.||||||||||||.
BL01649___gud 1128 TACGCATTGGATATGGCAGGATGGACAGCGTCTCACAAAACAGCCTTTTT 1177
BSNT_00441___ 1178 AGATTTCTTCTGGCTGTGTCAAGGTGCCGGATAAGCCTGGACTAGGCATC 1227
..|||.||...||.|.||||.|.||.||.|||.|||||||.||.|||||.
BL01649___gud 1178 CAATTGCTGACGGATATGTCCAAGTTCCTGATCAGCCTGGGCTCGGCATT 1227
BSNT_00441___ 1228 GATATTGATATGGAACAAGTGGAAAAAGCGCATGAGATCTATCGGAAAAT 1277
||.||.||.|||||||..|||||||||||..||||..|.|||..||||||
BL01649___gud 1228 GAAATCGACATGGAACGGGTGGAAAAAGCAAATGAACTATATGAGAAAAT 1277
BSNT_00441___ 1278 GAATTTAGGCGCACGGAATGACG-CGATCCCAATGCAGTTCCTGATCAGC 1326
||....|||||..||.|||||.| ||.|.|| ||||||||..|||| .|.
BL01649___gud 1278 GACAGCAGGCGAGCGCAATGATGCCGCTGCC-ATGCAGTTTTTGAT-TGA 1325
BSNT_00441___ 1327 AACTGGGAATTT-GACCGGAAGCGCCCGTGTCTTGTGCGATAA 1368
||.|.||..||| ||||..||.||.||.||||||||.||||||
BL01649___gud 1326 AAATTGGCGTTTCGACCCTAAACGTCCTTGTCTTGTTCGATAA 1368
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