Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02405 and BL01621

See Amino acid alignment / Visit BSNT_02405 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:57
# Commandline: needle
#    -asequence dna-align/BSNT_02405___ykoA.1.5803.seq
#    -bsequence dna-align/BL01621___ykoA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02405___ykoA-BL01621___ykoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02405___ykoA-BL01621___ykoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02405___ykoA
# 2: BL01621___ykoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 300
# Identity:     181/300 (60.3%)
# Similarity:   181/300 (60.3%)
# Gaps:          60/300 (20.0%)
# Score: 487.0
# 
#
#=======================================

BSNT_02405___      1 TTGAGGCTTTTAACACTT--ACTGAATATTGCTTACTGATCTTTTTTACG     48
                     .|||.||  |||.|||||  ||.|||||.|||.|..|.||.||||||.|.
BL01621___yko      1 ATGAAGC--TTATCACTTTGACGGAATACTGCATGTTTATTTTTTTTGCA     48

BSNT_02405___     49 GGCTTTTACCTTGCCGTAACAGGCTTTACCGCCAAAGATATC---GGCTT     95
                     ||..|.||.||||||.||||.||||||||.||  |.|..|||   |||||
BL01621___yko     49 GGGGTCTATCTTGCCATAACCGGCTTTACAGC--ACGGGATCTGGGGCTT     96

BSNT_02405___     96 ATATATAGGCATAGCCCTTATTTACATAT-------TTTCGC------AC    132
                      ||.||.||.||.|||.|.||||||.|.|       |.||||      ||
BL01621___yko     97 -TACATCGGGATTGCCATGATTTACGTGTTCGTTCATATCGCGGCGAAAC    145

BSNT_02405___    133 --ATTTTTTCTAAACGGCTTTTAGAAAAG----CGCGGAAAAGAGAACAA    176
                       ||..|.||.||||||     .||||||    ||||||||..||||   
BL01621___yko    146 GAATGCTGTCAAAACGG-----GGAAAAGAAGCCGCGGAAATCAGAA---    187

BSNT_02405___    177 ACAGGTTCACCTTTTCTTCAGTGTGCTAGCT-ATTATCGGTTCAGTGTTC    225
                                |.||.|.|||.||.|| .|| |||||.|..||.||||||
BL01621___yko    188 -----------TCTTGTACAGCGTTCT-TCTGATTATGGCCTCTGTGTTC    225

BSNT_02405___    226 ATCACGGT----TTTAT-GCATTGCATTGGTCGCTTCTTTTTCAAAATAA    270
                     .|.||.||    ||||| |||.|||     |.||.||.||.||...||||
BL01621___yko    226 GTTACCGTACTGTTTATCGCAGTGC-----TGGCATCATTATCCGCATAA    270


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