Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02427 and BL01615
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_02427.1.5803.seq
# -bsequence dna-align/BL01615___ykyA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02427-BL01615___ykyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02427-BL01615___ykyA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02427
# 2: BL01615___ykyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 677
# Identity: 139/677 (20.5%)
# Similarity: 139/677 (20.5%)
# Gaps: 478/677 (70.6%)
# Score: 360.0
#
#
#=======================================
BSNT_02427 1 ------------------------------------------------AT 2
|.
BL01615___yky 1 GTGAAATTTTCAAATATGCGGGTGCCCGCAGGCATCGTCGTTTTTTGCAC 50
BSNT_02427 3 G---GCACTGATATTAACAGGATG-CATGGGACAGGACCCGGTTGATTCA 48
| |||.|..||||||||||.|| |...||| ||||.||.||.||.||.
BL01615___yky 51 GGCTGCATTTGTATTAACAGGCTGTCTCTGGA-AGGATCCTGTCGAGTCG 99
BSNT_02427 49 CTTCATCATTCATTAGAAAAAGCCGCGGAATCGGAAAAGCCGTTTCAAGA 98
.||||....||..|.||.||...||.|||||.||||.||||.|||.||.|
BL01615___yky 100 TTTCACGGCTCGCTGGAGAAGATCGTGGAATTGGAAGAGCCTTTTAAACA 149
BSNT_02427 99 AGAACAAAACACACTT-AAAGAATT--AGAGGCCGAAGAAAATC--AGCT 143
|||.||.....||||| ||||..|| |.|.|||| |||| ||||
BL01615___yky 150 AGAGCAGGGTTCACTTAAAAGTCTTGAAAAAGCCG-----AATCGAAGCT 194
BSNT_02427 144 TTACGA--TAGTGTTATGAAGCTCAATATGGATGATTATAAAAAAATTGT 191
|||||| .|.|| ||.|.|||||||||||||||||.|.|....||.|.
BL01615___yky 195 TTACGAGGAAATG--ATCAGGCTCAATATGGATGATTTTGACCGGATCGC 242
BSNT_02427 192 TGCTTTATCTAATTAA---------------------------------- 207
|||..|.||..|..||
BL01615___yky 243 TGCGCTCTCCGACAAAGCGCTGAAGACAGCCGGCAAACGCGAGAAGCACT 292
BSNT_02427 207 -------------------------------------------------- 207
BL01615___yky 293 TGAATTCTGAGAAAGAAAGCATAGATGAAGCAAAGCAGGAGTTTGAAGCA 342
BSNT_02427 207 -------------------------------------------------- 207
BL01615___yky 343 AATAAAGCGTCGGCAGAAAAAATCGATGATCAGAAGGTCAGGAAAAAGGC 392
BSNT_02427 207 -------------------------------------------------- 207
BL01615___yky 393 TGAGAACGCTGCATCTTATATGGAAAAGCGCTACAAAGCATACGACTCTC 442
BSNT_02427 207 -------------------------------------------------- 207
BL01615___yky 443 TTTATGGCGCCTATCAAAACGCAATCGGCCTTGACAAAGAGCTGTACAAG 492
BSNT_02427 207 -------------------------------------------------- 207
BL01615___yky 493 CTGCTCAAAAATAAAGGGCTTAAACTGGATGACCTTGAGGAGCAGCTGAA 542
BSNT_02427 207 -------------------------------------------------- 207
BL01615___yky 543 AAAAATCAATCAATCGTATGACAAAGTGCTGAAAGAAAGCAAGCATTTCA 592
BSNT_02427 207 -------------------------------------------------- 207
BL01615___yky 593 ATGAGTATACAAAGGACTACAACAAAGCCAGAAAAGATTTTTACAAGGCT 642
BSNT_02427 207 --------------------------- 207
BL01615___yky 643 GCGGGGTTTGAGATGAAAGAGGGCTGA 669
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