Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02400 and BL01604

See Amino acid alignment / Visit BSNT_02400 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:57
# Commandline: needle
#    -asequence dna-align/BSNT_02400___fruR.1.5803.seq
#    -bsequence dna-align/BL01604___fruR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02400___fruR-BL01604___fruR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02400___fruR-BL01604___fruR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02400___fruR
# 2: BL01604___fruR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 774
# Identity:     575/774 (74.3%)
# Similarity:   575/774 (74.3%)
# Gaps:          39/774 ( 5.0%)
# Score: 2027.0
# 
#
#=======================================

BSNT_02400___      1 ATGCTAACTCCTGAACGGCATCAATTGATTATTGATCAAATAGAAAAGCA     50
                        .|.|||||.|||||||||||..||||||||||..|.||.||||||||
BL01604___fru      1 ---TTGACTCCCGAACGGCATCAGCTGATTATTGACGAGATTGAAAAGCA     47

BSNT_02400___     51 TGATGTGGTAAAGATTCAAGAGCTT-ATAAATCTGACTAATGCTTCTGAA     99
                     ||||||.||.|| |.||.||..||| ||.|||.|.||.||.||.|||||.
BL01604___fru     48 TGATGTCGTGAA-AATCCAGTACTTAATGAATTTAACGAACGCATCTGAG     96

BSNT_02400___    100 TCAACAATCAGAAGAGATTTATCGACCCTTGAAGAACGCGGTTTTTTAAA    149
                     |||||.||||||||||||||.|||||.||.||||..|||||.|.||||||
BL01604___fru     97 TCAACGATCAGAAGAGATTTGTCGACGCTGGAAGCCCGCGGATATTTAAA    146

BSNT_02400___    150 GCGCGTTCATGGTGGAGCGGCCAAGCTTTCCGATA-TCAGACTTGAACCC    198
                     |||.||||||||.||.||..|.|.||||||||||| ||..|| .||.||.
BL01604___fru    147 GCGTGTTCATGGAGGGGCATCAAGGCTTTCCGATATTCGTAC-GGAGCCT    195

BSNT_02400___    199 GATATGCTTGAAAAATCATCCAAAAACCTTCACGATAAATTG-AAAATTG    247
                     ||.|||||.||.||||||||||||||||||||.|| |||..| |||||.|
BL01604___fru    196 GACATGCTAGAGAAATCATCCAAAAACCTTCATGA-AAAGCGAAAAATCG    244

BSNT_02400___    248 CTGAAAAAGCAGCTTTTCTTTTAGAAGAAGGGGATTGCATTTACCTTGAT    297
                     ||.||.||||.||.|..|||.|.||||||||.|||||.||||||||||||
BL01604___fru    245 CTCAAGAAGCGGCCTCACTTCTTGAAGAAGGCGATTGTATTTACCTTGAT    294

BSNT_02400___    298 GCAGGCACGACGACATTGCACATGATTGATTTTATGGATAAAACCAAA--    345
                     ||.||.|||||.||||||||.|||||.||||||    ||.||.|||.|  
BL01604___fru    295 GCCGGAACGACCACATTGCAAATGATCGATTTT----ATCAATCCAGAGA    340

BSNT_02400___    346 --GATATTGTCGTTGTCACAAACGGGGTGATGCATATCGATGCATTA-AT    392
                       ||||||.||||.||.|||||.||.||.|||||.||.||.|||.|| .|
BL01604___fru    341 TGGATATTATCGTGGTTACAAATGGAGTCATGCACATTGAGGCACTAGGT    390

BSNT_02400___    393 AAGGAAAGAAATTTCTTTTTATCTGCTTGGAGGATACGTAAAGCACAGAA    442
                     || .||||..|||.||||||||.|..|.||.||.||.||.|||.|.|.||
BL01604___fru    391 AA-AAAAGGCATTACTTTTTATTTATTAGGCGGGTATGTGAAGTATAAAA    439

BSNT_02400___    443 CGGGCGCGATTATTGGAGGCGCTTCACTGATT-----GCCATGGACCAGT    487
                     |.||.|||   ||.|.|||||.||  |.|.||     |||||...|||.|
BL01604___fru    440 CCGGAGCG---ATCGTAGGCGGTT--CGGCTTTATCAGCCATCAGCCAAT    484

BSNT_02400___    488 ACAGATTTGACAAGAGTTT--TCTGGGGACAAACGGTGTCCATACAGAGG    535
                     ||.|.||||||||.||.||  || ||.|.| |||||..|.||||..||.|
BL01604___fru    485 ACCGGTTTGACAAAAGCTTCATC-GGCGTC-AACGGCATTCATAAGGAAG    532

BSNT_02400___    536 CTGGATTCACAACGCCGGACCCTGATGAAGCCCTTTT-AAAACAGAAAGC    584
                     |.||.|||||.||.|||||.|||||.|||||.||||| |||||| |||||
BL01604___fru    533 CGGGGTTCACGACTCCGGATCCTGAAGAAGCGCTTTTGAAAACA-AAAGC    581

BSNT_02400___    585 GATCAAACAGGCAAAACACGC--TTACGTCTTAGCAGACCCTTCGAAGTT    632
                     ..||||.|||||.|||.|.||  |||  |.|||||.|||..|||.|||||
BL01604___fru    582 TGTCAACCAGGCGAAAAAAGCATTTA--TTTTAGCTGACGTTTCCAAGTT    629

BSNT_02400___    633 CGGAGAAATTTCATTTTCGGCATTCGCCGCAATAGGCGACGCAACAATCA    682
                     .||.||||||||||||||.||.||.||||...|||.|||.|||||.||||
BL01604___fru    630 TGGGGAAATTTCATTTTCTGCCTTTGCCGGTTTAGACGAAGCAACTATCA    679

BSNT_02400___    683 TTACGACTGACGCTGAAGAGCTTACATTCGATAATTACCAAGAAAAAACT    732
                     ||||..|.|...|||.|.|.|.|.||||.|||||.||.||||||||||||
BL01604___fru    680 TTACAGCAGGATCTGCAAAACATTCATTTGATAACTATCAAGAAAAAACT    729

BSNT_02400___    733 GTCGTAAAGGTAGTGAAACCATGA    756
                     ||||||||||||||||||.|||||
BL01604___fru    730 GTCGTAAAGGTAGTGAAAACATGA    753


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02400 and BL01604

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
