Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01946 and BL01593
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_01946___yjbQ.1.5803.seq
# -bsequence dna-align/BL01593___yjbQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01946___yjbQ-BL01593___yjbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01946___yjbQ-BL01593___yjbQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01946___yjbQ
# 2: BL01593___yjbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1898
# Identity: 1379/1898 (72.7%)
# Similarity: 1379/1898 (72.7%)
# Gaps: 106/1898 ( 5.6%)
# Score: 4838.5
#
#
#=======================================
BSNT_01946___ 1 ATGGCGCATACATCTGTCGAATCTTTAGTTGTTGTACTTATCGTTGCATT 50
||||.|||.|||||||||..||||||||||||.|||||.||..|.|||||
BL01593___yjb 1 ATGGAGCACACATCTGTCTCATCTTTAGTTGTCGTACTGATTATCGCATT 50
BSNT_01946___ 51 TTTGACACCCATCCTTTTGCATCGGTTTAAACTCAGCATCCCGGTTGTTG 100
|||.|||||||||||..||||.||.||.|...|.|||||.|||||.||||
BL01593___yjb 51 TTTAACACCCATCCTGCTGCACCGTTTCAGGTTAAGCATACCGGTGGTTG 100
BSNT_01946___ 101 TTGCTGAAATCATTATGGGGCTGATAATTGGGAAAAGCGGCCTTAATTTA 150
|.|||||||||||.|||||.||.||.||.||.||||||||..|..||.|.
BL01593___yjb 101 TCGCTGAAATCATCATGGGTCTTATTATCGGAAAAAGCGGGTTCGATCTG 150
BSNT_01946___ 151 GTTGTGGAGGGTGACACCTGGCTCCAGACACTCTCTATGCTCGGATTTAT 200
||||...||...||.||.||||||.|.||..|.||.||||||||||||||
BL01593___yjb 151 GTTGCTCAGCACGATACTTGGCTCGAAACTTTATCGATGCTCGGATTTAT 200
BSNT_01946___ 201 CTTTTTAATGTTTTTAAGCGGGCTTGAAATTGATTTTTCGTCG--TTTGA 248
||||||||||||||||||||||||||||||.|||||||| || |||||
BL01593___yjb 201 CTTTTTAATGTTTTTAAGCGGGCTTGAAATCGATTTTTC--CGTATTTGA 248
BSNT_01946___ 249 GAAAGGAAAGAAAAAGCAGTTCCTGCCGAATGGCAAGGAAGCGCCGAATA 298
.|||||.||||||||||||.|.||.||||..||.||||||||||||||||
BL01593___yjb 249 AAAAGGTAAGAAAAAGCAGCTGCTTCCGAGCGGAAAGGAAGCGCCGAATA 298
BSNT_01946___ 299 CGTTT------GC-TGCGGCATCTGTTATTTTCGTCGGTATTTTTATTTT 341
||||| || |.||.||||| |||||..|||| |||||..|
BL01593___yjb 299 CGTTTAAAACGGCTTCCGTCATCT-TTATTGCCGTC------TTTATACT 341
BSNT_01946___ 342 ATCATTGCT---CTTGTCCTATGGGTTCGTCTTGGCCGGATTTATCCAAA 388
||| ||| |.|.|||||..|.||.|||.||||.||||||||..|.|
BL01593___yjb 342 ATC---GCTCGGCCTCTCCTACAGCTTTGTCATGGCAGGATTTATTGACA 388
BSNT_01946___ 389 ATGCATTTTTGATGACCCTGATTATTTCAACGATTTCATTAGGCGTTGTC 438
|.||.|||||.|||||.|||||.||||||||.|||||..|.||.||||||
BL01593___yjb 389 ACGCCTTTTTAATGACGCTGATCATTTCAACAATTTCGCTTGGGGTTGTC 438
BSNT_01946___ 439 GTTCCAACATTAAAAGAAGAACGGATCATGAATTCGAATATCGGGCAGAT 488
|||||.||..|.||.|||||.|||.|||||||..||||||||||.|||||
BL01593___yjb 439 GTTCCGACGCTGAAGGAAGAGCGGCTCATGAAGACGAATATCGGCCAGAT 488
BSNT_01946___ 489 TATTTTGCTTGTTGCTGTTATTGCTGATTTGGCCACGATGATTCTTCTTG 538
||||||||||||.||.||.|||||.|||.|.|.|||||||||.||.||||
BL01593___yjb 489 TATTTTGCTTGTCGCCGTGATTGCCGATCTTGTCACGATGATACTGCTTG 538
BSNT_01946___ 539 CTGTTTTTTCTTCTTTATACGGAGAGGACAGCGGAAACATGTGGCTCCTG 588
|.||.||..|.||..|.||||||||.||.|.|.|.||.||||||||.|||
BL01593___yjb 539 CGGTGTTCGCCTCAATCTACGGAGACGAAAACAGCAATATGTGGCTGCTG 588
BSNT_01946___ 589 ATGATTCTGTTTGCGGCCGGAGTGGTGCTTTACTTTTTCGGCCGGGTCTT 638
||||||.|.|||||.|||||.||.||..|.|||.|||||||..||||.||
BL01593___yjb 589 ATGATTTTATTTGCCGCCGGCGTTGTTTTATACATTTTCGGTAGGGTATT 638
BSNT_01946___ 639 CAAACATCGCTCTTTTGTTCAA-TCCATGTCAAAAGGGACGATCCAGATC 687
.|||.|.||..|||||||..|| |.| ||||||||||.||||||||||||
BL01593___yjb 639 TAAAAAGCGGCCTTTTGTCGAAGTGC-TGTCAAAAGGCACGATCCAGATC 687
BSNT_01946___ 688 GGGACGCGTGCCATTTTTACGTTAATTATTGTACTCGTTGCCCTGTCTGA 737
||.||..|.||.||.||||||.|.||.||.||||||||.||.||.||.||
BL01593___yjb 688 GGCACAAGGGCGATATTTACGCTGATCATCGTACTCGTGGCGCTTTCCGA 737
BSNT_01946___ 738 ATCACTTGGGGCGGAAAATATTCTCGGCGCTTTCTTAGCGGGGGTTCTTG 787
.||.||.||.||.|||||.|||||||||||.||.|||||.|||||.||||
BL01593___yjb 738 GTCGCTCGGTGCAGAAAACATTCTCGGCGCGTTTTTAGCCGGGGTGCTTG 787
BSNT_01946___ 788 TTTCCCTGCTTTCGCCAAACAAAGAACTTGTTCAGCAGCTGGACTCATTC 837
||||.|||||||||||.||||||||.||.|||||||||||.||.||||||
BL01593___yjb 788 TTTCGCTGCTTTCGCCGAACAAAGAGCTCGTTCAGCAGCTTGATTCATTC 837
BSNT_01946___ 838 GGTTATGGGTTCTTAATACCGATTTTCTTCGTGATGGTCGGTGTGAAGCT 887
||.||.||||||.|.||.|||||.|||||.||.|||...||.||.||..|
BL01593___yjb 838 GGCTACGGGTTCCTCATCCCGATCTTCTTTGTCATGACAGGCGTCAAATT 887
BSNT_01946___ 888 TGATATTTGGACTCT-TTTCCAGG--ATAAAACAATTTTAATCATGATTC 934
.||.||||||.|.|| ||| || ||...|.|||||||.|.|||||.|
BL01593___yjb 888 GGACATTTGGTCGCTGTTT---GGCAATCCGAAAATTTTAGTGATGATCC 934
BSNT_01946___ 935 CGCTCCTGCTGCTGGCGCTGTTAGTCAGCAAAATCATTCCTGTCATGTAC 984
||||.|||.|..||||.||||||.||||||||.||.||||.||..|||..
BL01593___yjb 935 CGCTTCTGTTTGTGGCTCTGTTAATCAGCAAAGTCGTTCCGGTGCTGTTT 984
BSNT_01946___ 985 TTAAAGAAGTGGTATGATAACCGAACCATTTTCGCGTCTGGTTTCCTGCT 1034
||.||.|||||||||||.|....||||.|..|.||.||.|||||.||.||
BL01593___yjb 985 TTGAAAAAGTGGTATGACATGAAAACCGTGCTGGCTTCCGGTTTTCTCCT 1034
BSNT_01946___ 1035 GACATCAACGCTTTCGCTCGTGATTGCCGCTGCAACAATCGGCCAGCAGC 1084
|||.||.||||||||.||.|||||.||.||..||||.||||||.||| ||
BL01593___yjb 1035 GACTTCCACGCTTTCTCTGGTGATCGCGGCGACAACGATCGGCGAGC-GC 1083
BSNT_01946___ 1085 TTCACGTGATCAGT---GCAAATATGTCAGGAGCGCTAATTTTAGTAGCC 1131
.| ||..||||.| ||..|.|||||.||.|||||.|||||.||.||.
BL01593___yjb 1084 AT--CGGCATCATTGACGCGCAGATGTCCGGCGCGCTGATTTTGGTGGCT 1131
BSNT_01946___ 1132 GTCATTGCAAGTATTTTTACGCCGATCTGTTTTAAAAAATT-ATAC---A 1177
||||||.||.|.||..|.||.||||.|.|.||||||||||| ||.| |
BL01593___yjb 1132 GTCATTACATGCATCATCACACCGACCGGCTTTAAAAAATTAATGCCGAA 1181
BSNT_01946___ 1178 AACGGGAAGAGCAGCCGGAGGAGAAAAAGACGATTACGTTCATTGGCGCC 1227
|||||.|||.|.| .|.||||||||||||||.||.||.||.|||||.
BL01593___yjb 1182 AACGGAAAGCGAA----AAAGAGAAAAAGACGATCACCTTTATCGGCGCG 1227
BSNT_01946___ 1228 AATCAAATGACTTTGCCTGTTACACTTGAA---TTGCCAGAGGAAGAGTA 1274
|||||||||||..||||.||.||.|||||| |..||| |||||.||
BL01593___yjb 1228 AATCAAATGACGCTGCCGGTCACGCTTGAACTTTCTCCA---GAAGATTA 1274
BSNT_01946___ 1275 TGACGTGCGTGTTGTACACGTCTACCAAGAGAATGCGGAGGAAAAGCTGT 1324
|.||||..|..|..|.||.|||...||.||.||...|||.|||||||||.
BL01593___yjb 1275 TCACGTCAGAATCCTGCATGTCCGGCAGGAAAAGAAGGAAGAAAAGCTGG 1324
BSNT_01946___ 1325 CAGAATCAGTGTTTGCTGTTGAAACAATTT---CTGACTATGAATACGAG 1371
|.||..|.|||||||..||||| |.||| |.||.|||||||||||.
BL01593___yjb 1325 CGGATCCGGTGTTTGACGTTGA---AGTTTTGCCAGATTATGAATACGAA 1371
BSNT_01946___ 1372 ACGCTTGAATCACTCGGCATTTTTGAAACGGATATCCTCGTTGTGGCGAC 1421
||||||.|||||.|||||.||||..||||||||||.|||||.||||||||
BL01593___yjb 1372 ACGCTTCAATCATTCGGCGTTTTCCAAACGGATATACTCGTCGTGGCGAC 1421
BSNT_01946___ 1422 AGGAAATGAAGATATGAATGCACACATTG--CATTACTTGCAAAAGAAAA 1469
|||.|..|||||....|||.||...||.| |.||| ||| .|
BL01593___yjb 1422 AGGCAGCGAAGAGCGCAATACAGGGATCGCCCTTTA--TGC-------GA 1462
BSNT_01946___ 1470 AGGCACAGAA-------AGAGTCATTGCAAGCGTAGGATCACCGGA---- 1508
|||..||||| |||.|.||.||.||||.||..||.||.||
BL01593___yjb 1463 AGGAGCAGAAAGTCGCGAGAATTATCGCCAGCGCAGATTCCCCAGACGCC 1512
BSNT_01946___ 1509 GCAT-GAAGCAGCTCTGAAGGAGCAGGGAAT-----CAGCATCTTTTCTA 1552
|.|| ||.| |||||.||..|.||||| || ||.||.|
BL01593___yjb 1513 GAATCGAGG-----CTGAAAGAAAACGGAATTGATACA-----TTCTCCA 1552
BSNT_01946___ 1553 TTCTGCTGTCGACAAAAACGCTGCTTCGCGCACTGATAGAAGCGCCTGGC 1602
|||||||.||.||.|||||||||||.|||||.||.||.||.|||||||||
BL01593___yjb 1553 TTCTGCTTTCCACGAAAACGCTGCTGCGCGCGCTTATCGAGGCGCCTGGC 1602
BSNT_01946___ 1603 GTCATGAAGCTGCTCACGAACCAAGAGTCTTCGCTGTATCAAATTAATAT 1652
||.|||||.||..|.||||||||.||..|.|||||||||||.||.|||||
BL01593___yjb 1603 GTTATGAAACTTTTGACGAACCAGGATGCGTCGCTGTATCAGATCAATAT 1652
BSNT_01946___ 1653 GGAGAACAGTAA---ATATGATGGTGTCATTTTACGGGAATTCCCTTTAA 1699
||.||.|.| ||.|||.||.|||.|.|||.||||.||.||.||.|
BL01593___yjb 1653 ---GAGCAATGAGCGATTTGACGGCGTCCTGTTAAGGGAGTTTCCGTTTA 1699
BSNT_01946___ 1700 CAGGTGACGTCATCTTTGTCAGGATTTTCAGAGGTGTGGACAGCATCGTT 1749
|.||.||.||||||||.|||.||||||||.|.||.||.|||||||||||.
BL01593___yjb 1700 CGGGAGATGTCATCTTCGTCCGGATTTTCCGCGGGGTTGACAGCATCGTG 1749
BSNT_01946___ 1750 CCTCATGGGGATACTAGGCTGAAACTGGGAGATCGCTTAATTGTCACCGG 1799
||.|||||||||||.||||||.||.||||.||..|..|.||.|.||||||
BL01593___yjb 1750 CCCCATGGGGATACAAGGCTGCAAATGGGTGACAGGCTGATCGCCACCGG 1799
BSNT_01946___ 1800 ATCTCGGGGGTACGTAACGGATCTTAAGAAAAC-ATTGGAAGGA-TAA 1845
.||.||.|..||..|..||||..|.||.||||| .||||| || |.|
BL01593___yjb 1800 TTCGCGCGAATATATTGCGGAATTGAAAAAAACGCTTGGA--GACTGA 1845
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