Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01950 and BL01590

See Amino acid alignment / Visit BSNT_01950 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:29
# Commandline: needle
#    -asequence dna-align/BSNT_01950___goxB.1.5803.seq
#    -bsequence dna-align/BL01590___goxB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01950___goxB-BL01590___goxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01950___goxB-BL01590___goxB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01950___goxB
# 2: BL01590___goxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1211
# Identity:     763/1211 (63.0%)
# Similarity:   763/1211 (63.0%)
# Gaps:         202/1211 (16.7%)
# Score: 2236.0
# 
#
#=======================================

BSNT_01950___      1 ATGAAAAGGCATTATGAAGCAGTGGTGATTGGAGGCGGAATGATCGG---     47
                     ||||.||.||..|||||..|..|.|||||.||.||.||.||.|||||   
BL01590___gox      1 ATGAGAAAGCGCTATGATACGATCGTGATCGGCGGAGGCATCATCGGGAC     50

BSNT_01950___     48 TTCCGCGATTGCTTATTATTTGGCAAA-----GGAAAACAAAAGCACCGC     92
                     ||||   ||.||||||.||.|.||.||     ||||||.|     ||.||
BL01590___gox     51 TTCC---ATCGCTTATCATCTTGCGAAAGCGGGGAAAAAA-----ACGGC     92

BSNT_01950___     93 ATTGTTTGAAAGC--GGAACAATGGGCGGCAGAA---CGACAAGTGCCGC    137
                     ..|||||||||||  ||||     |.|||||.||   ||||.||.||.||
BL01590___gox     93 CGTGTTTGAAAGCGGGGAA-----GTCGGCAAAAAAGCGACGAGCGCGGC    137

BSNT_01950___    138 TGCCGGAATGCTGGGCGCCCATGCCGAATGCGAAGAACGTGACGCGTTTT    187
                     |||.||.|||||.|||||||||||.||||||||..|||..|...|.||||
BL01590___gox    138 TGCGGGCATGCTCGGCGCCCATGCGGAATGCGATAAACCCGGTACCTTTT    187

BSNT_01950___    188 TTGATTTCGCCA-TGCACAGTC------------AGCGTCTGTACAAAGG    224
                     |.||.||.|||| .|| |||||            ||||.||| ||...||
BL01590___gox    188 TCGAATTTGCCAGAGC-CAGTCAAAAAGCCTATAAGCGCCTG-ACGGGGG    235

BSNT_01950___    225 TCTTGGAGAAGAGCTTTATGCATTATCCGGTGTGGATATCAGGCAGCATA    274
                     ..|||  .||||        || ||..|||..|.||||||||...||||.
BL01590___gox    236 AATTG--AAAGA--------CA-TAAGCGGCATTGATATCAGAAGGCATG    274

BSNT_01950___    275 ACGGCGGTATGTTTAAGCTTGCATTTTCTGAA---------GAAGATGTG    315
                     ||||.||.||.||.|||||.||||||||.|||         |||      
BL01590___gox    275 ACGGAGGGATATTAAAGCTGGCATTTTCAGAAAGCGACCGCGAA------    318

BSNT_01950___    316 CTGCAGCTGAGACAGATGG----ACGATTTGGACTCTGT-----------    350
                        ||.||||..||.||||    ||    ||||.|||||           
BL01590___gox    319 ---CACCTGATGCAAATGGGTGCAC----TGGATTCTGTGGAATGGCTTG    361

BSNT_01950___    351 CAGCTG-----GTATTCAAAAGAAGAGGTGTTAGAAAAAGAGCCGTATGC    395
                     .|||||     ||||..|||          ||||||      |||.||| 
BL01590___gox    362 AAGCTGATGAAGTATATAAA----------TTAGAA------CCGAATG-    394

BSNT_01950___    396 GTCTGG----TGACATCTTTGGTGCATCTTTTATTCA-GGATGATGTGCA    440
                       |.||    .|| ||..|.||.||...||||| ||| |||.||.||.||
BL01590___gox    395 --CCGGAAAAGGA-ATTCTCGGCGCCAATTTTA-TCAGGGACGACGTCCA    440

BSNT_01950___    441 TGTGGAGCCTTATTTTGTTTGCAAGGCATATGTGAAAGCAGCAAAAATGC    490
                     |||.||.||...|...||.||||.|||||.||..|..|.|||....||||
BL01590___gox    441 TGTCGAACCGGCTGCAGTGTGCAGGGCATTTGCCAGGGGAGCCCGGATGC    490

BSNT_01950___    491 TTGGGGCGGAGATTTTTGAGCATACGCCTGTCCTGCAT--GTCGAA--CG    536
                     |.||.||.||..|.||.|||.|||||||.||  |..||  .|.|||  ||
BL01590___gox    491 TCGGTGCAGATGTCTTCGAGTATACGCCCGT--TTTATCGATAGAATCCG    538

BSNT_01950___    537 TGACGGTGAAGCCCTGTC--CATCAAGACCCCT--------AGCGGAGAC    576
                     ...|||.|  |||  |||  |.|||.|.||.||        ||||||   
BL01590___gox    539 AAGCGGGG--GCC--GTCCGCGTCACGTCCGCTTCCGGCACAGCGGA---    581

BSNT_01950___    577 GTATGGGCTAATCATGTTGTCGTTGCCAGCGGGGTGTGGAGCGGAATGTT    626
                          |||..|.||.|.||||.||||.|||||.||||||||||||...||
BL01590___gox    582 -----GGCGGAGCACGCTGTCATTGCAAGCGGCGTGTGGAGCGGAGCTTT    626

BSNT_01950___    627 TTTTAAACA-----GCTTGGACTGAACAATGCTTTTCTCCCTGTAAAAGG    671
                     .||||||||     ||||.|||   |.||.|  |||..|||.||.|||||
BL01590___gox    627 GTTTAAACAAATCGGCTTAGAC---AAAAGG--TTTTACCCCGTCAAAGG    671

BSNT_01950___    672 GGAGTGCCTGTCCGTTTGGAATGATGATATCCCGCTGACAAAAACGCTTT    721
                     |||||||||||||||.||||||||.|..|||.|..||||.|.||||||||
BL01590___gox    672 GGAGTGCCTGTCCGTATGGAATGACGGCATCTCTTTGACGAGAACGCTTT    721

BSNT_01950___    722 ACCATGATCACTGCTATATCGTACCGAGAAAAAGCGGCAAACTGGTTGTC    771
                     ||||||||||.|||||.|||||.|||.|..|.|||||.|..||.||.|||
BL01590___gox    722 ACCATGATCATTGCTACATCGTTCCGCGCCATAGCGGAAGGCTTGTCGTC    771

BSNT_01950___    772 GGCGCGACAATGAAGCTGGGAGACTGGAGTGAAACA-CCGGATCTTGGCG    820
                     ||||||||.|||||||..||.|||||||.|| |.|| |||||.|||||| 
BL01590___gox    772 GGCGCGACGATGAAGCCCGGGGACTGGAATG-AGCAGCCGGAACTTGGC-    819

BSNT_01950___    821 GATTGGAATCG----GTT-ATGAAAAAAGCAAAAACGATGCTGCCGGCTA    865
                         |||||||    ||| ||...||||||.||..|||||||.||.|..|
BL01590___gox    820 ----GGAATCGAGGAGTTGATCCGAAAAGCCAAGTCGATGCTCCCTGGGA    865

BSNT_01950___    866 TACAGAAT--ATGAAGGTGGATCGTTTTTGGGCGGGACTCCGGCCGGGAA    913
                     |  .||||  |||||..|.||.|..|..|||||.||..|.||.||.|.||
BL01590___gox    866 T--TGAATCCATGAAAATCGACCAATGCTGGGCCGGGTTGCGTCCCGAAA    913

BSNT_01950___    914 CAAAGGATGGAAAACCGTACATCGGCAGACATCCTGAGGACAGCCGTATT    963
                     ||..||||||.||.|||||.|||||.|||||||||||..|...|||.|||
BL01590___gox    914 CAGGGGATGGCAATCCGTATATCGGAAGACATCCTGAAAATGACCGGATT    963

BSNT_01950___    964 TTATTTGCGGCGGGCCATTTCAGAAATGGGATCCTGCTTGCTCCCGCAAC   1013
                     ||.|||||.||.||.|||||||||||.||.|||||.||.||.||.|||||
BL01590___gox    964 TTGTTTGCTGCCGGACATTTCAGAAACGGCATCCTCCTGGCACCTGCAAC   1013

BSNT_01950___   1014 AGGCGCTTTGAT--CAG---TGAT-CTC----ATCATGAATAAAGAGGTC   1053
                     .||.|...||||  |||   |||| |||    |||          .||||
BL01590___gox   1014 CGGTGAGATGATGGCAGACATGATCCTCGGCAATC----------CGGTC   1053

BSNT_01950___   1054 AACCAAGACTGGCTGCACGCATT----CCGAATTGATCGCAAGGAGGCGG   1099
                     ||...|||.|||.|..|.||.||    .||    ||.||.||||||||.|
BL01590___gox   1054 AAAACAGAGTGGATCGAGGCGTTTAAAGCG----GAGCGAAAGGAGGCTG   1099

BSNT_01950___   1100 TTCAGATATGA   1110
                     |.||.|..|||
BL01590___gox   1100 TGCACAGGTGA   1110


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