Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01950 and BL01590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_01950___goxB.1.5803.seq
# -bsequence dna-align/BL01590___goxB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01950___goxB-BL01590___goxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01950___goxB-BL01590___goxB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01950___goxB
# 2: BL01590___goxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1211
# Identity: 763/1211 (63.0%)
# Similarity: 763/1211 (63.0%)
# Gaps: 202/1211 (16.7%)
# Score: 2236.0
#
#
#=======================================
BSNT_01950___ 1 ATGAAAAGGCATTATGAAGCAGTGGTGATTGGAGGCGGAATGATCGG--- 47
||||.||.||..|||||..|..|.|||||.||.||.||.||.|||||
BL01590___gox 1 ATGAGAAAGCGCTATGATACGATCGTGATCGGCGGAGGCATCATCGGGAC 50
BSNT_01950___ 48 TTCCGCGATTGCTTATTATTTGGCAAA-----GGAAAACAAAAGCACCGC 92
|||| ||.||||||.||.|.||.|| ||||||.| ||.||
BL01590___gox 51 TTCC---ATCGCTTATCATCTTGCGAAAGCGGGGAAAAAA-----ACGGC 92
BSNT_01950___ 93 ATTGTTTGAAAGC--GGAACAATGGGCGGCAGAA---CGACAAGTGCCGC 137
..||||||||||| |||| |.|||||.|| ||||.||.||.||
BL01590___gox 93 CGTGTTTGAAAGCGGGGAA-----GTCGGCAAAAAAGCGACGAGCGCGGC 137
BSNT_01950___ 138 TGCCGGAATGCTGGGCGCCCATGCCGAATGCGAAGAACGTGACGCGTTTT 187
|||.||.|||||.|||||||||||.||||||||..|||..|...|.||||
BL01590___gox 138 TGCGGGCATGCTCGGCGCCCATGCGGAATGCGATAAACCCGGTACCTTTT 187
BSNT_01950___ 188 TTGATTTCGCCA-TGCACAGTC------------AGCGTCTGTACAAAGG 224
|.||.||.|||| .|| ||||| ||||.||| ||...||
BL01590___gox 188 TCGAATTTGCCAGAGC-CAGTCAAAAAGCCTATAAGCGCCTG-ACGGGGG 235
BSNT_01950___ 225 TCTTGGAGAAGAGCTTTATGCATTATCCGGTGTGGATATCAGGCAGCATA 274
..||| .|||| || ||..|||..|.||||||||...||||.
BL01590___gox 236 AATTG--AAAGA--------CA-TAAGCGGCATTGATATCAGAAGGCATG 274
BSNT_01950___ 275 ACGGCGGTATGTTTAAGCTTGCATTTTCTGAA---------GAAGATGTG 315
||||.||.||.||.|||||.||||||||.||| |||
BL01590___gox 275 ACGGAGGGATATTAAAGCTGGCATTTTCAGAAAGCGACCGCGAA------ 318
BSNT_01950___ 316 CTGCAGCTGAGACAGATGG----ACGATTTGGACTCTGT----------- 350
||.||||..||.|||| || ||||.|||||
BL01590___gox 319 ---CACCTGATGCAAATGGGTGCAC----TGGATTCTGTGGAATGGCTTG 361
BSNT_01950___ 351 CAGCTG-----GTATTCAAAAGAAGAGGTGTTAGAAAAAGAGCCGTATGC 395
.||||| ||||..||| |||||| |||.|||
BL01590___gox 362 AAGCTGATGAAGTATATAAA----------TTAGAA------CCGAATG- 394
BSNT_01950___ 396 GTCTGG----TGACATCTTTGGTGCATCTTTTATTCA-GGATGATGTGCA 440
|.|| .|| ||..|.||.||...||||| ||| |||.||.||.||
BL01590___gox 395 --CCGGAAAAGGA-ATTCTCGGCGCCAATTTTA-TCAGGGACGACGTCCA 440
BSNT_01950___ 441 TGTGGAGCCTTATTTTGTTTGCAAGGCATATGTGAAAGCAGCAAAAATGC 490
|||.||.||...|...||.||||.|||||.||..|..|.|||....||||
BL01590___gox 441 TGTCGAACCGGCTGCAGTGTGCAGGGCATTTGCCAGGGGAGCCCGGATGC 490
BSNT_01950___ 491 TTGGGGCGGAGATTTTTGAGCATACGCCTGTCCTGCAT--GTCGAA--CG 536
|.||.||.||..|.||.|||.|||||||.|| |..|| .|.||| ||
BL01590___gox 491 TCGGTGCAGATGTCTTCGAGTATACGCCCGT--TTTATCGATAGAATCCG 538
BSNT_01950___ 537 TGACGGTGAAGCCCTGTC--CATCAAGACCCCT--------AGCGGAGAC 576
...|||.| ||| ||| |.|||.|.||.|| ||||||
BL01590___gox 539 AAGCGGGG--GCC--GTCCGCGTCACGTCCGCTTCCGGCACAGCGGA--- 581
BSNT_01950___ 577 GTATGGGCTAATCATGTTGTCGTTGCCAGCGGGGTGTGGAGCGGAATGTT 626
|||..|.||.|.||||.||||.|||||.||||||||||||...||
BL01590___gox 582 -----GGCGGAGCACGCTGTCATTGCAAGCGGCGTGTGGAGCGGAGCTTT 626
BSNT_01950___ 627 TTTTAAACA-----GCTTGGACTGAACAATGCTTTTCTCCCTGTAAAAGG 671
.|||||||| ||||.||| |.||.| |||..|||.||.|||||
BL01590___gox 627 GTTTAAACAAATCGGCTTAGAC---AAAAGG--TTTTACCCCGTCAAAGG 671
BSNT_01950___ 672 GGAGTGCCTGTCCGTTTGGAATGATGATATCCCGCTGACAAAAACGCTTT 721
|||||||||||||||.||||||||.|..|||.|..||||.|.||||||||
BL01590___gox 672 GGAGTGCCTGTCCGTATGGAATGACGGCATCTCTTTGACGAGAACGCTTT 721
BSNT_01950___ 722 ACCATGATCACTGCTATATCGTACCGAGAAAAAGCGGCAAACTGGTTGTC 771
||||||||||.|||||.|||||.|||.|..|.|||||.|..||.||.|||
BL01590___gox 722 ACCATGATCATTGCTACATCGTTCCGCGCCATAGCGGAAGGCTTGTCGTC 771
BSNT_01950___ 772 GGCGCGACAATGAAGCTGGGAGACTGGAGTGAAACA-CCGGATCTTGGCG 820
||||||||.|||||||..||.|||||||.|| |.|| |||||.||||||
BL01590___gox 772 GGCGCGACGATGAAGCCCGGGGACTGGAATG-AGCAGCCGGAACTTGGC- 819
BSNT_01950___ 821 GATTGGAATCG----GTT-ATGAAAAAAGCAAAAACGATGCTGCCGGCTA 865
||||||| ||| ||...||||||.||..|||||||.||.|..|
BL01590___gox 820 ----GGAATCGAGGAGTTGATCCGAAAAGCCAAGTCGATGCTCCCTGGGA 865
BSNT_01950___ 866 TACAGAAT--ATGAAGGTGGATCGTTTTTGGGCGGGACTCCGGCCGGGAA 913
| .|||| |||||..|.||.|..|..|||||.||..|.||.||.|.||
BL01590___gox 866 T--TGAATCCATGAAAATCGACCAATGCTGGGCCGGGTTGCGTCCCGAAA 913
BSNT_01950___ 914 CAAAGGATGGAAAACCGTACATCGGCAGACATCCTGAGGACAGCCGTATT 963
||..||||||.||.|||||.|||||.|||||||||||..|...|||.|||
BL01590___gox 914 CAGGGGATGGCAATCCGTATATCGGAAGACATCCTGAAAATGACCGGATT 963
BSNT_01950___ 964 TTATTTGCGGCGGGCCATTTCAGAAATGGGATCCTGCTTGCTCCCGCAAC 1013
||.|||||.||.||.|||||||||||.||.|||||.||.||.||.|||||
BL01590___gox 964 TTGTTTGCTGCCGGACATTTCAGAAACGGCATCCTCCTGGCACCTGCAAC 1013
BSNT_01950___ 1014 AGGCGCTTTGAT--CAG---TGAT-CTC----ATCATGAATAAAGAGGTC 1053
.||.|...|||| ||| |||| ||| ||| .||||
BL01590___gox 1014 CGGTGAGATGATGGCAGACATGATCCTCGGCAATC----------CGGTC 1053
BSNT_01950___ 1054 AACCAAGACTGGCTGCACGCATT----CCGAATTGATCGCAAGGAGGCGG 1099
||...|||.|||.|..|.||.|| .|| ||.||.||||||||.|
BL01590___gox 1054 AAAACAGAGTGGATCGAGGCGTTTAAAGCG----GAGCGAAAGGAGGCTG 1099
BSNT_01950___ 1100 TTCAGATATGA 1110
|.||.|..|||
BL01590___gox 1100 TGCACAGGTGA 1110
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