Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01954 and BL01587
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_01954___thiF.1.5803.seq
# -bsequence dna-align/BL01587___thiF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01954___thiF-BL01587___thiF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01954___thiF-BL01587___thiF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01954___thiF
# 2: BL01587___thiF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1059
# Identity: 723/1059 (68.3%)
# Similarity: 723/1059 (68.3%)
# Gaps: 96/1059 ( 9.1%)
# Score: 2360.0
#
#
#=======================================
BSNT_01954___ 1 ATGACGGGCAGGTATTCAAGGCAGGAGCTGTTTGCTCCGATCGGCCCATC 50
.||||.||||||||||||||.||||||||.|||...||||||||.||...
BL01587___thi 1 TTGACCGGCAGGTATTCAAGACAGGAGCTCTTTCACCCGATCGGACCGGA 50
BSNT_01954___ 51 CGGCCAGAAAAAATTGAAAGAAGCGCGCGC-----CGTGATTATCGGCGC 95
|||||||.||||||| |||..||||.||| |||| |||||.||
BL01587___thi 51 CGGCCAGGAAAAATT--AAGCCGCGCCCGCGTCCTCGTG---ATCGGTGC 95
BSNT_01954___ 96 CGGCGCGCTCGGAACAGCCAGTGCAGAAATGCTGGTGAGAGCGGGAGTCG 145
.||.||..|.||..|.|||||.|||||||||||||||||.||.||.||||
BL01587___thi 96 TGGGGCTTTGGGCGCGGCCAGCGCAGAAATGCTGGTGAGGGCCGGGGTCG 145
BSNT_01954___ 146 ----GCCATGTGAAAATTGCCGACAGAGATTATGTTGAATGGAGCAACCT 191
|| |||..||.|||||||||||||||||.|||||||||||.||
BL01587___thi 146 GTTCGC----TGACGATAGCCGACAGAGATTATGTGGAATGGAGCAATCT 191
BSNT_01954___ 192 CCAGCGCCAGCAGCTTTATACAGAAGATGATGTCAAAAAAGAAATGCCGA 241
|||||||||||||||.|||||.|||.|.|||||.|...|..|.|||||.|
BL01587___thi 192 CCAGCGCCAGCAGCTCTATACGGAACAGGATGTGATTGATCATATGCCAA 241
BSNT_01954___ 242 AAGCAGCCGCTGCGGA---------GCGCCATCTCCGTTCGATTAACAGC 282
|.||.|||||.||.|| ||||| .|||.||||||
BL01587___thi 242 AGGCCGCCGCCGCTGAAAAAAGGCTGCGCC---------TGATCAACAGC 282
BSNT_01954___ 283 GATGTTGATGTGACCGGCCTTGTCATGGATGTGACAGCAGAAAATATC-T 331
..||||.|.||.|||||..|.||...||||||.||.||.||||| |.| .
BL01587___thi 283 TCTGTTCAAGTAACCGGAATCGTAGCGGATGTTACTGCGGAAAA-AGCGC 331
BSNT_01954___ 332 TCGAGCT----GATTAGGGATGCATCGATTATTGTGGATGCGGCTGATAA 377
||||||| || |||.||.||..|.||.||.||||||.|.|||||
BL01587___thi 332 TCGAGCTTGCGGA----GGAAGCGTCCCTGATCGTCGATGCGACGGATAA 377
BSNT_01954___ 378 TTTTGAAACCCGCCTGATCGTAAATGATGCTGCGGTAAAGGAAGGGATTC 427
|||||||||.||.||||||.|.||.||.||.|||||.||...|||.||.|
BL01587___thi 378 TTTTGAAACACGGCTGATCATGAACGACGCGGCGGTCAAATTAGGCATCC 427
BSNT_01954___ 428 CTTTTCTTTACGGTGCCTGTGTAGGGAGCTACGGCCTCACCTTTACCGTG 477
||||.||.|||||.||.|||||.|..|||||.|||.||||.|.||.|||.
BL01587___thi 428 CTTTCCTGTACGGCGCGTGTGTCGCAAGCTATGGCATCACATATAGCGTA 477
BSNT_01954___ 478 GTGCCGGGTTCTACTCCTTGCCTGCATTG-CTT-----GCTCGATACACT 521
.|.|||||....||.||.||.||.||||| ||| || ||...|.
BL01587___thi 478 ATTCCGGGAAAAACGCCGTGTCTTCATTGTCTTTTGGGGC---ATTTGCC 524
BSNT_01954___ 522 TCCGATTGGCGGAGCA--ACATGTGACACAGCCGGCATCATCAGTCCGGC 569
|.|||.| |.|| ||.||.||||||||.||..|.|||.||||||.
BL01587___thi 525 TGCGAAT-----ACCATGACGTGCGACACAGCAGGGGTGATCGGTCCGGT 569
BSNT_01954___ 570 TGTTTTGCAGGTAGCAGTCTTTCAGGTAACAGATGCACTGAAGCTGCTGA 619
.||...||||||.||.|..|..||||||||||||||.|||||||||||||
BL01587___thi 570 CGTCCAGCAGGTTGCCGCATACCAGGTAACAGATGCCCTGAAGCTGCTGA 619
BSNT_01954___ 620 CGGGAGAGGAGTGC--GAGCC------GATGCTGCGCTCCTTTGATTTGT 661
|.|| || ||.|| ||||||.|||||.||||||.|.|
BL01587___thi 620 CCGG--------GCATGAACCGTCAGGGATGCTCCGCTCATTTGATATTT 661
BSNT_01954___ 662 GGAAAAATGAGCGGTCGGAAGTGAGAGCGGCCAGTCTCAAACATGACGCA 711
|||.||||||||||||.|||||..|.||.|.||..||.||||||||..||
BL01587___thi 662 GGACAAATGAGCGGTCTGAAGTCCGGGCTGACACGCTTAAACATGAGACA 711
BSNT_01954___ 712 TGCCCAAGCTGTGGCACAAAG--GATTTTCCGTTTTTGTCATATGAAAAT 759
||.||.|..||.|| .|||| ||.|||||||||.|.|||..||||||.
BL01587___thi 712 TGTCCGACGTGCGG--AAAAGGCGAGTTTCCGTTTCTTTCAGCTGAAAAC 759
BSNT_01954___ 760 CAAACAAAAGCGGCTGTATTGTGCGGCAGGAACACGGTGCAGATCAGATC 809
.||||||||||.||.||..|.||||||||..|.|||||.||||||||..|
BL01587___thi 760 GAAACAAAAGCAGCCGTTCTTTGCGGCAGACAAACGGTTCAGATCAGGCC 809
BSNT_01954___ 810 ATCTATTACG----AAAGAAGC-GGATCTTGAAGCGCTTGCCGCTCAGCT 854
..| || |.||..|| |||.||.|||.|||||||.||..|..|
BL01587___thi 810 GGC-----CGCGGAACAGCCGCTGGAACTGGAATCGCTTGCTGCCAAATT 854
BSNT_01954___ 855 GAGGCAGGCCGGGCTTGAA--GTAGCTGCGAACCCGTATTTAATTTCCTG 902
.|...|.||||| ||.|| ||..|.|..||.||.||||||.|||||||
BL01587___thi 855 AAAAAAAGCCGG--TTTAAATGTGACGGGAAATCCTTATTTAGTTTCCTG 902
BSNT_01954___ 903 CCGCTCGGATGATATGAAAATGGTGCTGTTCCGGGACGGCAGAGCTTTGA 952
|||..||||.|||.|.||..|.|||.|.||.|||||.||..|.|||||.|
BL01587___thi 903 CCGTGCGGAGGATTTTAAGTTCGTGATTTTTCGGGATGGACGTGCTTTAA 952
BSNT_01954___ 953 TCCATGGAACAAATGATATTGCCCGGGCAAAATCCATTTATCATAAATGG 1002
|.||.|||||.|||||.||....||.||.|||.|.||.|||||.|..|||
BL01587___thi 953 TTCACGGAACGAATGACATCAATCGCGCGAAAACGATATATCACAGGTGG 1002
BSNT_01954___ 1003 ATTGGGTAA 1011
|||||.|||
BL01587___thi 1003 ATTGGCTAA 1011
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