Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06029 and BL01584
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:03
# Commandline: needle
# -asequence dna-align/BSNT_06029___yxiD.1.5803.seq
# -bsequence dna-align/BL01584.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06029___yxiD-BL01584.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06029___yxiD-BL01584.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06029___yxiD
# 2: BL01584
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1760
# Identity: 911/1760 (51.8%)
# Similarity: 911/1760 (51.8%)
# Gaps: 580/1760 (33.0%)
# Score: 2471.5
#
#
#=======================================
BSNT_06029___ 0 -------------------------------------------------- 0
BL01584 1 ATGAAGACGCTGGATGTTCAAGCGCTGCACAATGCAATTGATCAAACGCT 50
BSNT_06029___ 0 -------------------------------------------------- 0
BL01584 51 GGAACAATTAAAACAACAATCAGATGAATTCTCTAAAGTCAAAAAAGCAG 100
BSNT_06029___ 0 -------------------------------------------------- 0
BL01584 101 TTGAGGGCATCACATCACTTGATGATGCTTTAAAAGGAAAAGGCGGCGAC 150
BSNT_06029___ 1 -------------------------------------------------A 1
|
BL01584 151 GCGATCCGCGCCTTTTACGAGGAATGTCACACCCCTTTTCTTCAGTTTTA 200
BSNT_06029___ 2 TG-----TTTATCGACGAATACA--------------AAAAAGTGCTGAA 32
|| ||.||.||.||||||| |||| ||||
BL01584 201 TGATACTTTCATAGAGGAATACAGTTCCACGCTGAAGAAAA-----TGAA 245
BSNT_06029___ 33 ACAAACCCAGCATGC-GATTTCCTCAGTAGAATCTGACTCCCACGGCATG 81
| |||..|| ||.|||| .|.|||.|..||....||||..|.
BL01584 246 A-------AGCGCGCTGAATTCC---CTGGAACCAAACCATAACGGATTT 285
BSNT_06029___ 82 ATCGCAGAGGCTTTTCTCTCACACGA--TGCGAGACATGGGGTCAA---- 125
||..||.||.|.||||||..|||||| || |||| ||||..|.||
BL01584 286 ATTTCACAGTCCTTTCTCGAACACGAGTTG-GAGA-ATGGCTTAAATGCC 333
BSNT_06029___ 126 GC--AT-GCACGAGAA--------GTGACAGAGCAGCTCACTGACGCAGT 164
|| || ||||.|.|| ||..|..|| || || ||||...
BL01584 334 GCTGATCGCACAACAAAACATTTGGTTTCTAAG--GC-CA---ACGCCAC 377
BSNT_06029___ 165 GAATCGCCAGACATCAGCCATCGGCCACATCGTCAGCTTGCCGGCAGTCA 214
| |||| ||.|..|||||||| ||||||..|||.||||...|.|
BL01584 378 G-ATCG-CAAAAGTCAGCCAT-------ATCGTCGACTTACCGGATTTGA 418
BSNT_06029___ 215 ATGATACC--TTTTTCCGAATGGAAACAGAACAGGCTGAGCGACTGATTA 262
||||.|.| ||||...|||...||.||||| |||| |||
BL01584 419 ATGACAGCGGTTTTCATGAACAAAATCAGAA-------AGCG-----TTA 456
BSNT_06029___ 263 CAGACACCCTGCATAAGCTCTTTCAA-----------TTTGACGGCCAGC 301
.||..|..|.|||..| |||||..|| ||||||.||.|||
BL01584 457 AAGGAAATCAGCACGA-CTCTTGAAAAGCTGCATGCGTTTGACCGCGAGC 505
BSNT_06029___ 302 AAACCCAAGCACTAGAAGC-----AAAATCAGATTTTCAAACGATGAAAA 346
|||||.|.||.||..||.| |||| .|||.||.|.||||||.|.|
BL01584 506 AAACCAACGCCCTCAAAACGGCTGAAAA--CGATCTTGAGACGATGCAGA 553
BSNT_06029___ 347 AATACATTGATCAGCTCGAAACCATGTACACTGGGCCGAAAATTGAAATC 396
.||||||.|..|.||||||||..|||||.||.||.||.||||||||||||
BL01584 554 GATACATGGCGCGGCTCGAAAAGATGTATACCGGCCCTAAAATTGAAATC 603
BSNT_06029___ 397 ACAGGCTACAAAAGCGGCTCCATCCTGAA-----ATCACA---------- 431
|||||.|||.|||..|||.|.||..|.|| ||.|.|
BL01584 604 ACAGGTTACCAAAAAGGCGCGATTTTAAAGCCGGATGAGATGGATACCCT 653
BSNT_06029___ 432 ----GGAA--CAAGAAAACATCAACCAAACCTTCGGCGC---GATTAACC 472
|||| ||||||| ||.|.| |.||.|| |.|.||
BL01584 654 GAGTGGAAATCAAGAAA----CAGCGA-----TGGGTGCCATGTTGAA-- 692
BSNT_06029___ 473 CGCAAATGAAGCAGCCGGATGATTCACCGATGGAGATGATGCTGAAGAAA 522
||| ||.|||| ||...|||.|||| || ||.|
BL01584 693 ---AAA------AGTCGGA---------GACAAAGAAGATG-TG--GACA 721
BSNT_06029___ 523 CTA--------GCCG----AGA---ATGAAAAGTCTAAAGTGGATTCAGT 557
||| |||| ||| ||.|||| |||.|||...||
BL01584 722 CTAACACTATCGCCGATCCAGACCGATTAAAA----AAATTGGCGACA-- 765
BSNT_06029___ 558 TGTCAAAACGGGTCATTCTAA-AAAGGTAAGTAAAAATATCATCGTTATC 606
||||| ||| |||.|| |||| |||| ||.| |
BL01584 766 ---CAAAA--GGT--TTCCAAGAAAG---AGTA-------CACC-----C 793
BSNT_06029___ 607 AATGGAAAAGTGTATAATACGAGTGAACATAGA--GAACATATAAAAACT 654
|| ||| || ||.|| |||| |.||||..
BL01584 794 AA------------------GAG-GA--ATTGAATGAAC---TGAAAAAA 819
BSNT_06029___ 655 GATTTCTCAAATGCAGAGGTTAAGCAAGTTGTTTATAATGATACACTTTA 704
|||| || ||| ||.|.|||.|||||.|||||
BL01584 820 GATT------AT--AGA-------------GTATTTAACGATACGCTTTA 848
BSNT_06029___ 705 CAATGTATACATATCTGGTAATGACA----TGAAGCTTGAACCTGTCGTC 750
|...|.|||||||...||..|| ||| |.|||.|.|||||.|.|..|
BL01584 849 CCGGGCATACATAGACGGCGAT-ACAATCGTCAAGATAGAACCCGCCTAC 897
BSNT_06029___ 751 TCGCTTTCGGACATTAAAGTGGATGAGAATG-GAT----ATGTGAAAATT 795
.|.|||.|.|| .||.||||| |.||.| ||| || ||||.|
BL01584 898 ACCCTTCCAGA---GAATGTGGA--AAAAAGCGATTTTAAT---AAAAAT 939
BSNT_06029___ 796 TTAGAGGCAGCTGTAGAACTTACCGGCGTGTATGATCTATTTAAAGCAGC 845
||.||..|.||..|.|||.||||.||.|||||||||..|.|.|.||||||
BL01584 940 TTCGATACGGCGATGGAATTTACAGGTGTGTATGATGCAGTAAGAGCAGC 989
BSNT_06029___ 846 CACGGGCAGAGATCCGGTAT----------CAGGAGAAAAAGTCACAGGG 885
|.|..|.||| ||||.||||..||.|.|||.
BL01584 990 ----------GTTTGGATATGACCTTGCGACAGGCGAAATCGTTAAAGGT 1029
BSNT_06029___ 886 AA---AGACCGTGTTGTTGCCTCCATAAACTCAGT-----ACCATTTGCC 927
|| .||.||| |||.||.|...|| |.||| |||.||||
BL01584 1030 AATGGGGATCGT-TTGATGGCCGGAT----TGAGTGTCACACCTTTTG-- 1072
BSNT_06029___ 928 AAAATAGCTAAGTTAGAAAAG----TTAATA--GATATTAA--------T 963
||||.| |.|||| || || |
BL01584 1073 ---------------GAAAGGCATTTAAATACGGA----AAGCGCGGCTT 1103
BSNT_06029___ 964 AAACTTATTAATGATGGGAAAAAGGCTAAGAAGGCTTCGG--AAGTTAAA 1011
.||.||||| .|||||..|||||| ||| ||| |
BL01584 1104 CAAGTTATT----------TAAAGGTGAAGAAG----CGGGAAAG----A 1135
BSNT_06029___ 1012 AACGTTGCTAAGG------ATACGGGTAATGGTGTACCTTCTTATGG-AA 1054
||| ||||.|||| |.|| ||||||.||.|| ||
BL01584 1136 AAC-TTGCGAAGGTAGATAAAAC------------ACCTTCCTACGGCAA 1172
BSNT_06029___ 1055 AGAAGTCAGTACCTAAAGGACCTTACAGAGAAGTACATGGATTCCCAGTT 1104
|.|| ||.|||||.|||||.||.||..|.|||||.|||||.|||||.|..
BL01584 1173 ACAA-TCCGTACCAAAAGGTCCGTATCGCGAAGTGCATGGTTTCCCTGCA 1221
BSNT_06029___ 1105 AAAGTAAAGCCAGGTGCTCAAGAGAAACATATTCCTAATACGCCAAATTA 1154
||||||||.|||||.||||||||.||||||||||||...||.|||||.||
BL01584 1222 AAAGTAAAACCAGGAGCTCAAGAAAAACATATTCCTGGAACACCAAACTA 1271
BSNT_06029___ 1155 CAAACAAGAAATAGCAAATG---GTAAAAACAAGAGTATTTTCTATGGTG 1201
|||||||||||||||.|||| ||||||||||.||.||.|||||.||.|
BL01584 1272 CAAACAAGAAATAGCTAATGGTCGTAAAAACAAAAGCATCTTCTACGGAG 1321
BSNT_06029___ 1202 ATAATAAAACAGCACAGGAATTGCTTGATAAGTTTGCAGGAAAAGGTCA- 1250
||||||||||.|||||.||||||||.|||||||||||||||||||| ||
BL01584 1322 ATAATAAAACGGCACAAGAATTGCTAGATAAGTTTGCAGGAAAAGG-CAC 1370
BSNT_06029___ 1251 ACTACTACCAAACGGTAAAAAAGAAAGAGTAGACTTTGGTAAACCAATTG 1300
.||..||..|||.||....|||||.||||||||||||||.|||..|||.|
BL01584 1371 TCTGTTAAAAAATGGGGTCAAAGAGAGAGTAGACTTTGGCAAAGTAATAG 1420
BSNT_06029___ 1301 GAAAATACTATGATCGTGATACTGGTGAATACATTGAAACTACTAGAGGA 1350
||||||.|||||||...|||||||||.|.||..|.||.|||||||||||.
BL01584 1421 GAAAATTCTATGATAAAGATACTGGTAAGTATGTGGAGACTACTAGAGGT 1470
BSNT_06029___ 1351 ATGATTCATTACGGAAAAGACGGAGCGCATATAGTGCCTTCAGAACCATT 1400
.||||.||||||.|.|||.||||.||.||||||||.||||||||.||.||
BL01584 1471 TTGATACATTACAGCAAAAACGGCGCTCATATAGTACCTTCAGAGCCTTT 1520
BSNT_06029___ 1401 AAAGAAGTAA 1410
|||....|||
BL01584 1521 AAAACCTTAA 1530
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