Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03681 and BL01568
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_03681___comGE.1.5803.seq
# -bsequence dna-align/BL01568___comGE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03681___comGE-BL01568___comGE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03681___comGE-BL01568___comGE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03681___comGE
# 2: BL01568___comGE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 420
# Identity: 212/420 (50.5%)
# Similarity: 212/420 (50.5%)
# Gaps: 144/420 (34.3%)
# Score: 437.5
#
#
#=======================================
BSNT_03681___ 1 ATGTGGAGAGAAAATAAAGGTTTTTCTACAATAGAAACAATGTCTGCGCT 50
||||..|.|.||||||||||.|||.|.||..|.|||.| |||.|.|||
BL01568___com 1 ATGTTCAAAAAAAATAAAGGCTTTACAACGGTTGAAGC--TGTTTCCGC- 47
BSNT_03681___ 51 AAGTCTGTGGC-TGTTTGTGCTGCTGAC------AGTCGTCCC----CTT 89
|.|| ||| |.|..||..||.|.|| |.|..|||| |||
BL01568___com 48 -ATTC---GGCATATGGGTAATGATCACCATGTTATTGATCCCTATGCTT 93
BSNT_03681___ 90 GTGGGACA--AGCTG--ATAGCTGATGAAAAAATGGCG-GAA---TCACG 131
|| ||||| ||.|| .||| ||| || ||
BL01568___com 94 ------CATCAGCTGTCATTGC------------AGCGCGAAGCGTC-CG 124
BSNT_03681___ 132 AGAAATCGGCTATCAGATGATGAATGAGAGCAT-TAGCAAATATGTCATG 180
|.||| ||.||| |||| ||| |.|||.||
BL01568___com 125 AAAAA-------------GAAGAA-GAGA-CATATCGCATAT-------- 151
BSNT_03681___ 181 AGTGGTGAAGG--------AGCCGCGTCAAAAACGATTAC---------- 212
||.||| |||||| .|.|||.|.||
BL01568___com 152 -----TGGAGGAAAAGATCAGCCGC----TACACGCTGACCGGACGGTTC 192
BSNT_03681___ 213 ------AAAGAA--------------CAATCATATCTATGC---AATGAA 239
|||||| .||| |.|||| |.| |.||||
BL01568___com 193 CAGGCTAAAGAAGCTGTGCTTTACCGGAAT-ACATCT-TACTTTATTGAA 240
BSNT_03681___ 240 GTGGGAGGAGGAGGGCGAATATCAAAACGTATGTATC----------AAA 279
|||.|||||.||||.||..||.|..|.|||||.||| |||
BL01568___com 241 -TGGAAGGAGAAGGGAGATGATTATGAAGTATGCATCTCTATTAAAAAAA 289
BSNT_03681___ 280 GCCACAGCTTATAAAGAGAAATCA-TATTGCCTCAGCATCCTGCAGACAG 328
|..||||| .|||| .|| |.|| |||.|||..|||.|.||.
BL01568___com 290 GAGACAGC---CAAAG-----GCACTGTT---TCACCATTTTGCGGGCAA 328
BSNT_03681___ 329 AATGGCTATACGCTTCTTAA 348
|..||.|||||.||||||||
BL01568___com 329 AGGGGATATACCCTTCTTAA 348
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