Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03680 and BL01567
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:42
# Commandline: needle
# -asequence dna-align/BSNT_03680___comGF.1.5803.seq
# -bsequence dna-align/BL01567___comGF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03680___comGF-BL01567___comGF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03680___comGF-BL01567___comGF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03680___comGF
# 2: BL01567___comGF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 557
# Identity: 235/557 (42.2%)
# Similarity: 235/557 (42.2%)
# Gaps: 247/557 (44.3%)
# Score: 534.0
#
#
#=======================================
BSNT_03680___ 0 -------------------------------------------------- 0
BL01567___com 1 ATGAAGTATGCATCTCTATTAAAAAAAGAGACAGCCAAAGGCACTGTTTC 50
BSNT_03680___ 0 -------------------------------------------------- 0
BL01567___com 51 ACCATTTTGCGGGCAAAGGGGATATACCCTTCTTAATATAATGTTTTCCT 100
BSNT_03680___ 1 -----TTGCTCATAT------CAGGATCGTTAGCTGCGATTTTCCATCTG 39
.|||.|||.| ||||..||.|.||..||||.||.||||||
BL01567___com 101 TAATGGTGCACATGTTCGTTGCAGGTACGATGGCCTCGATATTTCATCTG 150
BSNT_03680___ 40 TTTTTGTCTCGACAGCAGGAACATGACGGT-------TTCACACAGCAAG 82
|||||.||.| |.|.|.||| ||||| ||||| |..|..|
BL01567___com 151 TTTTTATCCC--CGGAAAGAA----ACGGTTCGGATATTCAC-CCCCGTG 193
BSNT_03680___ 83 AATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGA------- 125
||||||.||||.|....||.||.||..||||.||.| |.||||
BL01567___com 194 AATGGACGATTACTGCCGAGCAAATATTGAAGGAGT-CTAGGAATTCGAT 242
BSNT_03680___ 126 -GTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCGTGTTAATCTG-CAC 173
|.||.|.|.||| |||| |||.|.|||.| |||
BL01567___com 243 TGACATAAGAAGT-------GCCG-----------GTGATCATCAGTCAC 274
BSNT_03680___ 174 ---------CAATCTTTCCGGGCAG--GACATCCGTTTCGAAAT-----T 207
||| .|||...|| |||| ||| ||||..|| .
BL01567___com 275 TAGCGATGACAA----ACCGCCAAGGTGACA-CCG-TTCGCTATGAGCAA 318
BSNT_03680___ 208 TATCATTCAATGATAAGAAAAAGAGTGGATGGCAAAGGGCATGTTCCGAT 257
|||||..||.|.||..|||||||.||..||||.|||||.|||||.||
BL01567___com 319 TATCAGACAGTTATTCGAAAAAGGGTCAATGGAAAAGGTCATGTGCC--- 365
BSNT_03680___ 258 TTTAGATCATATTACTGCCATG----AAAGCTGA-------TATTGAAAA 296
|| ||||||.| |||| |||..||| .||||||||
BL01567___com 366 ------TC-TATTACAG-CATGTCAAAAAAATGAGGTTTATGATTGAAAA 407
BSNT_03680___ 297 TGGTGTTGTTT----TGCTGAAAATTGAGAGTGAG-GACCAAAAAGTGT- 340
| ||||||...|||| || ||| ||||.|
BL01567___com 408 ----------TCACCTGCTGATCCTTGA-----AGCGAC----AAGTCTA 438
BSNT_03680___ 341 --------ATCAAACTG-----CTTTTCCAGTCTATTCGTATTTAGGAGG 377
||||.||.| ||.||||..|||| ||.|||.||.
BL01567___com 439 AGCGGCAAATCATACCGCACGTCTATTCCGCTCTA-TCATATGTAA---- 483
BSNT_03680___ 378 GGGGTGA 384
BL01567___com 483 ------- 483
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