Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03665 and BL01562
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:41
# Commandline: needle
# -asequence dna-align/BSNT_03665___gcvT.1.5803.seq
# -bsequence dna-align/BL01562___gcvT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03665___gcvT-BL01562___gcvT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03665___gcvT-BL01562___gcvT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03665___gcvT
# 2: BL01562___gcvT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1150
# Identity: 794/1150 (69.0%)
# Similarity: 794/1150 (69.0%)
# Gaps: 116/1150 (10.1%)
# Score: 2524.5
#
#
#=======================================
BSNT_03665___ 1 ATGCTGAAAAGAACGCCGTTATTTGACCTGTATAAGGAATATGGAGGAAA 50
|||||.|||.|.|||||.|||||||||||.||||||||||||||.||.||
BL01562___gcv 1 ATGCTTAAACGTACGCCTTTATTTGACCTTTATAAGGAATATGGCGGGAA 50
BSNT_03665___ 51 AACGATTGATTTCGGAGGTTGGGAGCTTCCTGTTCAATTTTCTTCTATAA 100
||||||||||||.||.||.|||||.||.||.||.||||||||||||||.|
BL01562___gcv 51 AACGATTGATTTTGGCGGCTGGGAACTGCCAGTCCAATTTTCTTCTATTA 100
BSNT_03665___ 101 AAAAAGAACACGAGGCTGTC----CGAACTGCAGCCGGTTTGTTTGATGT 146
||.|.||.|||||.||.||| |||| |||.||..|.|||||.||
BL01562___gcv 101 AAGAGGAGCACGAAGCCGTCAGGACGAA----AGCGGGGCTTTTTGACGT 146
BSNT_03665___ 147 ATCTCATATGGGAGAAGTCGAAGTGTCAGGGAAC-GACAGTCTGTCTTTT 195
.||.||.||||||||.||||||.|..|| ||||| |||||.||..|.||.
BL01562___gcv 147 CTCACACATGGGAGAGGTCGAAATCACA-GGAACGGACAGCCTTCCGTTC 195
BSNT_03665___ 196 TTGCAAAGATTGATGACAAATGATGTTTC--CGCGTTAACGCCAGGCCGT 243
|||||||...||.|||||||.|||||||| ||| |.||.| .||||.|.
BL01562___gcv 196 TTGCAAAAGCTGTTGACAAACGATGTTTCGACGC-TGAAAG-AAGGCGGC 243
BSNT_03665___ 244 GCTCAATATACAGCGATGTGTTACCCGGATGGCGGAACCGTCGATGATTT 293
||.||.|||||.||.|||||.||....||.||||||||..||||.|||.|
BL01562___gcv 244 GCCCAGTATACGGCTATGTGCTATGAAGACGGCGGAACGATCGACGATCT 293
BSNT_03665___ 294 GCTTATCTATCAAAAAGAAGAGAACCGCTATCTGCTTGTCATTAATGCTT 343
.||..|||||.||||||..|..||...||||.||||.||||||||.||..
BL01562___gcv 294 CCTCGTCTATAAAAAAGCGGCCAATGTCTATATGCTCGTCATTAACGCAG 343
BSNT_03665___ 344 CTAATATAGATAAAGACTTGGCTTGGATGA--AAGAACATGCAGCAGGTG 391
|.|||||.||.||.|||.|.|.|||||||| |||.|.||..|| ||||
BL01562___gcv 344 CCAATATCGACAAGGACGTCGATTGGATGAACAAGCATATAAAG--GGTG 391
BSNT_03665___ 392 A--TGTACAGATTGACAACCAGTCAGATCAAATCGCGCTCTTGGCTGTAC 439
| ||| |.|.|.|| |||...||.||..|.||.||||||.|.||..|.|
BL01562___gcv 392 ACGTGT-CGGTTCGA-AACGTATCTGACGAGATTGCGCTCCTTGCCCTTC 439
BSNT_03665___ 440 AGGGACCGAAAGCAGAAGCGGTCTTAAAAAATCTGACAGAT-GCAGAT-G 487
|.||.|||||.||.|||||..|.||||| ||||.| |||||| .
BL01562___gcv 440 AAGGGCCGAAGGCCGAAGCAATTTTAAA-------ACAGGTCGCAGATCA 482
BSNT_03665___ 488 TGTC--TGC---ATTAAAGCCGTTTGCGTT----TATTGATGAAGCCGAT 528
||.| ||| |||||||||||||..||| .| |||||.|||.|.|
BL01562___gcv 483 TGACCTTGCAGAATTAAAGCCGTTTATGTTCCGGGA-TGATGCAGCGGTT 531
BSNT_03665___ 529 ATCAGCG-GCCGCAAAGCACTTATTTCACGCACTGGCTATACGGGAGAAG 577
..||||| || |.||.|||.|.||..|.||.||.||.||||||||.|
BL01562___gcv 532 GGCAGCGTGC----AGGCGCTTGTGTCCAGAACGGGATACACGGGAGAGG 577
BSNT_03665___ 578 ACGGGTATGAAATTTACTGCCGCAGTGATGATGCTA---TGCATATTTGG 624
||||.|.|||.|||||||||||.|.|||.||||| | ||| ||||||
BL01562___gcv 578 ACGGCTTTGAGATTTACTGCCGGAATGAAGATGC-AGCCTGC--ATTTGG 624
BSNT_03665___ 625 AAAAAAATCATCGATGCAGGGGATGCATAC-GGATTGATTCCATGCGGTC 673
||.....||.|.||..| |||.|.|.||.| ||||||.|.||.|||||.|
BL01562___gcv 625 AAGCTGCTCCTTGAAAC-GGGCAAGGATTCGGGATTGGTGCCGTGCGGCC 673
BSNT_03665___ 674 TCGGTGCACGTGATACACTCCGGTTTGAAGCGAAGCTCCCGCTCTACGGT 723
||||.||.||.|||||.||..||||||||||||||||.|||||.|||||.
BL01562___gcv 674 TCGGGGCTCGGGATACGCTGAGGTTTGAAGCGAAGCTGCCGCTTTACGGA 723
BSNT_03665___ 724 CAGGAGCT-------GACCCGGGATATTACACCGATTGAAGCAGGTATAG 766
|||||||| ||| |||||.|||||.|||||.||.||.|
BL01562___gcv 724 CAGGAGCTCTCAAAAGAC-------ATTACGCCGATCGAAGCCGGCATCG 766
BSNT_03665___ 767 GCTTTGCTGT-AAAGCAC-AAAAAAGAGTCTGACTTTTTCGGTAAGTCAG 814
|.|||||.|| ||| || ||.||||..||.||.||..||||.||..|.|
BL01562___gcv 767 GATTTGCCGTCAAA--ACGAACAAAGCCTCGGATTTCATCGGAAAAGCCG 814
BSNT_03665___ 815 TATTG---AGTGAACAAAAAGAAAACGGAGCGAAGCGCAAACTTGTCGGT 861
|..|| || .|||||.|||.|.||||||.|..|.||.||.||.||.
BL01562___gcv 815 TCCTGGCAAG---CCAAAAGGAACATGGAGCGGACAGAAAGCTGGTTGGC 861
BSNT_03665___ 862 CTCGAAATGATTGAAAAAGGGATACCGCGGCACGGATATGAGGT---TTT 908
||.||||||||.||.|||||.||.||..|.||||||||.|..|| ||.
BL01562___gcv 862 CTTGAAATGATCGATAAAGGCATTCCAAGACACGGATACGCCGTCTATTA 911
BSNT_03665___ 909 CCAAAATGG----CAAGTCTGTCGGAAAGGTGACAACCGGCACGCAGTCA 954
.||| || |||| |.|.|| ||||||||||||||||.|||||.
BL01562___gcv 912 TCAA---GGCGAACAAG-CAGGCG---AGGTGACAACCGGCACACAGTCG 954
BSNT_03665___ 955 CCGACTTTAGGGAAAAACGTCGGCCTTGCCTTAATTGATTCGGAAACAAG 1004
|||||||||..|||||||||||||||.|| |||| |.||||.|||
BL01562___gcv 955 CCGACTTTAAAGAAAAACGTCGGCCTCGC----ATTG---CTGAAAAAAG 997
BSNT_03665___ 1005 -----TGAG--ATCGGGACTGTTGTAGATGTAGAGATTCGCAAAAAA--T 1045
||.| .|||..||.||.||.||.||.|||||..|.||.||| |
BL01562___gcv 998 AAGCCTGCGCCCTCGACACCGTAGTTGAAGTGGAGATCAGAAATAAACGT 1047
BSNT_03665___ 1046 TAGTGAAAGCAAAGGTTGTCAAAACACCATTTTATAAACG------CTAA 1089
| |||||||.||..|.||.|||||.||||||||.||||| .|||
BL01562___gcv 1048 T--TGAAAGCCAAAATCGTGAAAACCCCATTTTACAAACGGCAGCCGTAA 1095
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