Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03670 and BL01552

See Amino acid alignment / Visit BSNT_03670 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:41
# Commandline: needle
#    -asequence dna-align/BSNT_03670___sinR.1.5803.seq
#    -bsequence dna-align/BL01552___sinR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03670___sinR-BL01552___sinR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03670___sinR-BL01552___sinR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03670___sinR
# 2: BL01552___sinR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 344
# Identity:     304/344 (88.4%)
# Similarity:   304/344 (88.4%)
# Gaps:          10/344 ( 2.9%)
# Score: 1360.0
# 
#
#=======================================

BSNT_03670___      1 ATGACATTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTA     50
                           ||||||||||||||||||||||||||.||.||||||||||||||
BL01552___sin      1 ------TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTA     44

BSNT_03670___     51 CTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGCGAAGTCTTATTTAA    100
                     |||||||||.||||||||||||||.|||||||||||||||||||||||||
BL01552___sin     45 CTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGCGAAGTCTTATTTAA     94

BSNT_03670___    101 GCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAA    150
                     |.|||||||||.||||..|.|||||.||||||||||||||||||||.|||
BL01552___sin     95 GTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAA    144

BSNT_03670___    151 AAAGTCTCCGCTGTTCTGGACGTCTCGGTTCATACTTTGCTCGATGAGAA    200
                     |||||||||||||||||||||||||||||||||||..|||||||||||||
BL01552___sin    145 AAAGTCTCCGCTGTTCTGGACGTCTCGGTTCATACCCTGCTCGATGAGAA    194

BSNT_03670___    201 ACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAAT-TG    249
                     |.|||||||||||||||||||||||||||||||||||||||| |||| |.
BL01552___sin    195 AGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGA-AAATCTA    243

BSNT_03670___    250 GTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATT    299
                     |||||.||.||.|||.||||.|||||.||.||||||||||||||.|||||
BL01552___sin    244 GTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATT    293

BSNT_03670___    300 TTTAGATTATCAAAAATGG-AGAAAATCCCAAAAAGAGGAGTAG    342
                     |||||||||||||||.||| |||||| ..||..||.|||||||.
BL01552___sin    294 TTTAGATTATCAAAAGTGGAAGAAAA-GACAGGAAAAGGAGTAA    336


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